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Report for CCDS19978.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19978.1 Public Mus musculus 6 Cep41 23 108 98 CCDS HistoryNCBI Gene:83922Re-query CCDS DB by CCDS ID:19978.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19978.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031810.14 ENSMUSP00000031810.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031810.14Link to Ensembl Protein Viewer:ENSMUSP00000031810.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031810Re-query CCDS DB by Protein ID:ENSMUSP00000031810
Original member Current member NCBI NM_031998.3 NP_114387.1 Accepted alive Link to Nucleotide Sequence:NM_031998.3Link to Protein Sequence:NP_114387.1Re-query CCDS DB by Nucleotide ID:NM_031998Re-query CCDS DB by Protein ID:NP_114387Link to BLAST:NP_114387.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_114387.1 373 Q99NF3-1 373 100% 0 0

Chromosomal Locations for CCDS 19978.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 30655702 30655850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30656479 30656694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30657298 30657412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30658357 30658424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30658773 30658924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30660870 30661014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30666267 30666336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30667381 30667442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30671323 30671370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30680131 30680194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30693637 30693669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1122 nt):
ATGTCTGCCCGGAGGCACATTGGGAATCCTGAGTATCTGACCAGACGGATACCACAGAACCCAAGGTATC
AACATGTCAAGTCAAGACTGGATACTGGTAACAGCATGACCAAATACATTGAGAAGCTAGAAGAGATTAA
AAAAAATTATAGATACAAAAAAGATGAACTTTTCAAGAGACTAAAAGTTACCACTTTTGCCCAGCTGGTC
ATTCAAGTCGCTTCCCTGTCAGATCAAACACTGGAAGTGACAGCTGAGGAGATCCAAAGGCTCGAAGACA
ATGATTCTGCAACTTCAGAGGCTGATGCTGAAATTGCTGCCAAGACAAATGGGAAAGGGAGCCCTGAGGA
ACAGTCACCCAGCCCTGTCCAGTTCATCAACAGCACGGGAGCAGGGGACTCCAGCCGCTCCACTCTGCAG
AGCGTCATCAGTGGCGTTGGGGAACTGGATGTAGACAAAGGGCTCGTAAAGAAAGAAGAACCCAATGGCA
AAGACAAGCCTTATCCGGACTGTCCCTTCCTGCTGCTAGATGTTCGAGACAGAGATTCTTATCAGCAGTG
TCACATTGTCGGGGCTTACAGTTACCCCATTGCAACTCTATCCAGGACAATGAACCCCTATTCAAATGAC
ATTCTTGAGTACAAGAACGCCCACGGCAAGATCATCATCTTATACGACGAGGACGAGAGGCTGGCCAGCC
AGGCGGCCACCACCATGTGTGAGCGTGGGTTTGAAAACCTCTTCATGCTTTCCGGGGGTCTGAAAGTCTT
AGCTCAGAAGTTCCCAGAAGGACTGGTCACTGGTTCCCTGCCAGCCTCTTGCCAGCAGGCCCTCCCTTTT
GGTTCTGTCCGGAAACGACGTGGCCCCAAAATGCCAGCCCTGCCAGCTGAGAACAAGTGGAGATTTACCC
CAGAAGACTTAAAAAAGATAGAATGTTACCTGGAAGAGGACCAGGGACCAGCAGACAACCCTAGCCGACT
GAACCAGAATAACTCTGCTGGAAAAGACTCGAAGGTGGCTGCTTGCCGCGGTGGCCAGAACCTGCCCACC
AGCTGTCCTGCCAGCCACTCGAGCCCCCGCACGCTCACCAGCGGTCACCTGCAAGGCAAACCCTGGAAGT
GA

Translation (373 aa):
MSARRHIGNPEYLTRRIPQNPRYQHVKSRLDTGNSMTKYIEKLEEIKKNYRYKKDELFKRLKVTTFAQLV
IQVASLSDQTLEVTAEEIQRLEDNDSATSEADAEIAAKTNGKGSPEEQSPSPVQFINSTGAGDSSRSTLQ
SVISGVGELDVDKGLVKKEEPNGKDKPYPDCPFLLLDVRDRDSYQQCHIVGAYSYPIATLSRTMNPYSND
ILEYKNAHGKIIILYDEDERLASQAATTMCERGFENLFMLSGGLKVLAQKFPEGLVTGSLPASCQQALPF
GSVRKRRGPKMPALPAENKWRFTPEDLKKIECYLEEDQGPADNPSRLNQNNSAGKDSKVAACRGGQNLPT
SCPASHSSPRTLTSGHLQGKPWK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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