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Report for CCDS9053.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9053.1 Public Homo sapiens 12 USP44 24 110 108 CCDS HistoryNCBI Gene:84101Re-query CCDS DB by CCDS ID:9053.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9053.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000258499.8 ENSP00000258499.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000258499.8Link to Ensembl Protein Viewer:ENSP00000258499.3Re-query CCDS DB by Nucleotide ID:ENST00000258499Re-query CCDS DB by Protein ID:ENSP00000258499
Original member Current member EBI ENST00000393091.6 ENSP00000376806.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393091.6Link to Ensembl Protein Viewer:ENSP00000376806.2Re-query CCDS DB by Nucleotide ID:ENST00000393091Re-query CCDS DB by Protein ID:ENSP00000376806
Original member Current member EBI ENST00000537435.2 ENSP00000442629.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000537435.2Link to Ensembl Protein Viewer:ENSP00000442629.2Re-query CCDS DB by Nucleotide ID:ENST00000537435Re-query CCDS DB by Protein ID:ENSP00000442629
Original member Current member NCBI NM_001042403.3 NP_001035862.1 Accepted alive Link to Nucleotide Sequence:NM_001042403.3Link to Protein Sequence:NP_001035862.1Re-query CCDS DB by Nucleotide ID:NM_001042403Re-query CCDS DB by Protein ID:NP_001035862Link to BLAST:NP_001035862.1
Original member Current member NCBI NM_001278393.2 NP_001265322.1 Accepted alive Link to Nucleotide Sequence:NM_001278393.2Link to Protein Sequence:NP_001265322.1Re-query CCDS DB by Nucleotide ID:NM_001278393Re-query CCDS DB by Protein ID:NP_001265322Link to BLAST:NP_001265322.1
Original member Current member NCBI NM_001347936.2 NP_001334865.1 Accepted alive Link to Nucleotide Sequence:NM_001347936.2Link to Protein Sequence:NP_001334865.1Re-query CCDS DB by Nucleotide ID:NM_001347936Re-query CCDS DB by Protein ID:NP_001334865Link to BLAST:NP_001334865.1
Original member Current member NCBI NM_001347937.2 NP_001334866.1 Accepted alive Link to Nucleotide Sequence:NM_001347937.2Link to Protein Sequence:NP_001334866.1Re-query CCDS DB by Nucleotide ID:NM_001347937Re-query CCDS DB by Protein ID:NP_001334866Link to BLAST:NP_001334866.1
Original member Current member NCBI NM_032147.5 NP_115523.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032147.5Link to Protein Sequence:NP_115523.2Re-query CCDS DB by Nucleotide ID:NM_032147Re-query CCDS DB by Protein ID:NP_115523Link to BLAST:NP_115523.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035862.1 712 Q9H0E7 712 100% 0 0
NP_001265322.1 712 Q9H0E7 712 100% 0 0
NP_001334865.1 712 Q9H0E7 712 100% 0 0
NP_001334866.1 712 Q9H0E7 712 100% 0 0
NP_115523.2 712 Q9H0E7 712 100% 0 0

Chromosomal Locations for CCDS 9053.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 95518154 95518353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95520997 95521202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95524680 95524788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95528807 95529002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 95532829 95534256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2139 nt):
ATGCTAGCAATGGATACGTGCAAACATGTTGGGCAGCTGCAGCTTGCTCAAGACCATTCCAGCCTCAACC
CTCAGAAATGGCACTGTGTGGACTGCAACACGACCGAGTCCATTTGGGCTTGCCTTAGCTGCTCCCATGT
TGCCTGTGGAAGATATATTGAAGAGCATGCACTCAAGCACTTTCAAGAAAGCAGTCATCCTGTTGCATTG
GAGGTGAATGAGATGTACGTTTTTTGTTACCTTTGTGATGATTATGTTCTGAATGATAACACAACTGGAG
ACCTGAAGTTACTACGACGTACATTAAGTGCCATCAAAAGTCAAAATTATCACTGCACAACTCGTAGTGG
GAGGTTTTTACGGTCCATGGGTACAGGTGATGATTCTTATTTCTTACATGACGGTGCCCAATCTCTGCTT
CAAAGTGAAGATCAACTGTATACTGCTCTTTGGCACAGGAGAAGGATACTAATGGGTAAAATCTTTCGAA
CATGGTTTGAACAATCACCCATTGGAAGAAAAAAGCAAGAAGAACCATTTCAGGAAAAAATAGTAGTAAA
AAGAGAAGTAAAGAAAAGACGGCAGGAATTGGAGTATCAAGTTAAAGCAGAATTGGAAAGTATGCCTCCA
AGAAAGAGTTTACGTTTACAAGGGCTCGCTCAGTCGACCATAATAGAAATAGTTTCTGTTCAGGTGCCAG
CACAAACGCCAGCATCACCAGCAAAAGATAAAGTACTCTCTACCTCAGAAAATGAAATATCTCAAAAAGT
CAGTGACTCCTCAGTTAAACGAAGGCCAATAGTAACTCCTGGTGTAACAGGATTGAGAAATTTGGGAAAT
ACTTGCTATATGAATTCTGTTCTTCAGGTGTTGAGTCATTTACTTATTTTTCGACAATGTTTTTTAAAGC
TTGATCTGAACCAATGGCTGGCTATGACTGCTAGCGAGAAGACAAGATCTTGTAAGCATCCACCAGTCAC
AGATACAGTAGTATATCAAATGAATGAATGTCAGGAAAAAGATACAGGTTTTGTTTGCTCCAGACAATCA
AGTCTGTCATCAGGACTAAGTGGTGGAGCATCAAAAGGTAGAAAGATGGAACTTATTCAGCCAAAGGAGC
CAACTTCACAGTACATTTCTCTTTGTCATGAATTGCATACTTTGTTCCAAGTCATGTGGTCTGGAAAGTG
GGCGTTGGTCTCACCATTTGCTATGCTACACTCAGTGTGGAGACTCATTCCTGCCTTTCGTGGTTACGCC
CAACAAGACGCTCAGGAATTTCTTTGTGAACTTTTAGATAAAATACAACGTGAATTAGAGACAACTGGTA
CCAGTTTACCAGCTCTTATCCCCACTTCTCAAAGGAAACTCATCAAACAAGTTCTGAATGTTGTAAATAA
CATTTTTCATGGACAACTTCTTAGTCAGGTTACATGTCTTGCATGTGACAACAAATCAAATACCATAGAA
CCTTTCTGGGACTTGTCATTGGAGTTTCCAGAAAGGTATCAATGCAGTGGAAAAGATATTGCTTCCCAGC
CATGTCTGGTTACTGAAATGTTGGCCAAATTTACAGAAACTGAAGCTTTAGAAGGAAAAATCTACGTATG
TGACCAGTGTAACTCAAAGCGTAGAAGGTTTTCCTCCAAACCAGTTGTACTCACAGAAGCCCAGAAACAA
CTTATGATATGCCACCTACCTCAGGTTCTCAGACTGCACCTCAAACGATTCAGGTGGTCAGGACGTAATA
ACCGAGAGAAGATTGGTGTTCATGTTGGCTTTGAGGAAATCTTAAACATGGAGCCCTATTGCTGCAGGGA
GACCCTGAAATCCCTCAGACCAGAATGCTTTATCTATGACTTGTCCGCGGTGGTGATGCACCATGGGAAA
GGATTTGGCTCAGGGCACTACACTGCCTACTGCTATAATTCTGAAGGAGGGTTCTGGGTACACTGCAATG
ATTCCAAACTAAGCATGTGCACTATGGATGAAGTATGCAAGGCTCAAGCTTATATCTTGTTTTATACCCA
ACGAGTTACTGAGAATGGACATTCTAAACTTTTGCCTCCAGAGCTCCTGTTGGGGAGCCAACATCCCAAT
GAAGACGCTGATACCTCGTCTAATGAAATCCTTAGCTGA

Translation (712 aa):
MLAMDTCKHVGQLQLAQDHSSLNPQKWHCVDCNTTESIWACLSCSHVACGRYIEEHALKHFQESSHPVAL
EVNEMYVFCYLCDDYVLNDNTTGDLKLLRRTLSAIKSQNYHCTTRSGRFLRSMGTGDDSYFLHDGAQSLL
QSEDQLYTALWHRRRILMGKIFRTWFEQSPIGRKKQEEPFQEKIVVKREVKKRRQELEYQVKAELESMPP
RKSLRLQGLAQSTIIEIVSVQVPAQTPASPAKDKVLSTSENEISQKVSDSSVKRRPIVTPGVTGLRNLGN
TCYMNSVLQVLSHLLIFRQCFLKLDLNQWLAMTASEKTRSCKHPPVTDTVVYQMNECQEKDTGFVCSRQS
SLSSGLSGGASKGRKMELIQPKEPTSQYISLCHELHTLFQVMWSGKWALVSPFAMLHSVWRLIPAFRGYA
QQDAQEFLCELLDKIQRELETTGTSLPALIPTSQRKLIKQVLNVVNNIFHGQLLSQVTCLACDNKSNTIE
PFWDLSLEFPERYQCSGKDIASQPCLVTEMLAKFTETEALEGKIYVCDQCNSKRRRFSSKPVVLTEAQKQ
LMICHLPQVLRLHLKRFRWSGRNNREKIGVHVGFEEILNMEPYCCRETLKSLRPECFIYDLSAVVMHHGK
GFGSGHYTAYCYNSEGGFWVHCNDSKLSMCTMDEVCKAQAYILFYTQRVTENGHSKLLPPELLLGSQHPN
EDADTSSNEILS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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