NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS3304.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3304.2 Public Homo sapiens 3 ATP13A4 24 110 108 CCDS HistoryNCBI Gene:84239Re-query CCDS DB by CCDS ID:3304.2See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 3304.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000342695.9 ENSP00000339182.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000342695.9Link to Ensembl Protein Viewer:ENSP00000339182.4Re-query CCDS DB by Nucleotide ID:ENST00000342695Re-query CCDS DB by Protein ID:ENSP00000339182
Original member Current member NCBI NM_032279.4 NP_115655.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032279.4Link to Protein Sequence:NP_115655.2Re-query CCDS DB by Nucleotide ID:NM_032279Re-query CCDS DB by Protein ID:NP_115655Link to BLAST:NP_115655.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115655.2 1196 Q4VNC1-1 1196 100% 0 0

Chromosomal Locations for CCDS 3304.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 193402652 193402864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193407313 193407393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193410982 193411070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193412178 193412371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193414579 193414750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193433845 193433917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193435648 193435744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193438475 193438584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193439023 193439065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193440558 193440637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193441466 193441588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193442393 193442556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193448206 193448330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193454101 193454212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193457000 193457153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193457379 193457465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193459081 193459231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193462762 193462823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193464940 193465128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193466025 193466182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193467316 193467486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193470859 193470993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193483936 193484005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193489730 193489864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193491329 193491398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193492917 193492997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193493090 193493160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193502493 193502639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193514698 193514871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 193554740 193554799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3591 nt):
ATGGGACACTTTGAGAAGGGCCAGCACGCTCTGCTCAATGAAGGAGAAGAGAATGAGATGGAGATATTTG
GCTATCGGACTCAAGGCTGCCGGAAAAGTCTCTGCCTTGCCGGATCCATCTTCTCATTTGGAATCCTCCC
CTTGGTGTTTTACTGGAGACCAGCATGGCACGTATGGGCACATTGTGTCCCATGTTCCTTGCAAGAAGCA
GACACTGTGTTGCTGAGGACAACGGATGAATTCCAAATTTACTCTTGGAAAAAGGTAATATGGATCTACC
TGTCAGCATTAAACAGCGCATTTGGTCTCACTCCTGACCACCCTCTCATGACAGATGAGGAGTATATCAT
AAATAGAGCCATAAGAAAGCCAGACCTAAAGGTGAGATGCATCAAAGTGCAGAAAATAAGATATGTTTGG
AACTACTTAGAAGGACAGTTCCAGAAAATTGGTTCTTTGGAAGACTGGCTTAGTTCTGCCAAGATACATC
AAAAATTTGGATCAGGCTTGACAAGAGAAGAACAGGAGATTAGGAGGTTAATATGTGGGCCTAATACTAT
CGATGTTGAAGTTACACCAATTTGGAAACTGCTCATCAAGGAGGTTCTAAATCCATTTTATATATTTCAA
CTCTTCAGTGTCTGTTTGTGGTTTAGTGAAGACTATAAGGAATATGCTTTTGCCATCATAATCATGTCCA
TAATTTCCATATCTTTGACAGTATATGATCTCAGAGAGCAATCTGTAAAACTCCACCATCTCGTCGAGTC
ACATAATAGCATTACGGTCTCTGTATGTGGGAGAAAAGCTGGAGTTCAAGAGCTGGAATCACGCGTCCTG
GTGCCTGGAGATTTATTAATTTTGACAGGGAACAAAGTGCTAATGCCATGTGATGCCGTTCTGATTGAAG
GCAGCTGTGTGGTGGATGAAGGCATGCTGACAGGAGAAAGTATTCCAGTCACCAAAACTCCGTTACCCAA
GATGGATAGCTCTGTGCCCTGGAAAACACAGAGTGAAGCGGATTACAAGCGGCATGTCCTCTTCTGTGGA
ACAGAGGTTATCCAGGCCAAGGCAGCTTGCTCTGGGACCGTGAGAGCCGTGGTACTGCAGACTGGATTCA
ACACTGCAAAGGGAGACCTTGTGAGATCCATTCTCTACCCTAAGCCAGTGAATTTTCAGTTGTACAGGGA
TGCCATCAGGTTCCTCCTGTGCCTTGTAGGAACAGCCACCATTGGGATGATCTATACTCTGTGTGTCTAT
GTGCTTAGTGGGGAACCTCCAGAGGAGGTGGTGAGGAAAGCCCTTGACGTCATCACAATTGCGGTTCCTC
CGGCTCTACCTGCTGCTCTGACCACAGGCATTATCTATGCCCAGAGGAGGCTGAAGAAGAGAGGCATCTT
CTGCATTAGCCCCCAGAGGATCAACGTATGTGGACAGTTAAACCTTGTCTGCTTTGACAAGACAGGCACC
TTAACAAGGGACGGCTTGGACCTCTGGGGAGTCGTGTCCTGTGATAGGAATGGCTTTCAGGAAGTTCACA
GCTTTGCCTCAGGCCAGGCTTTGCCATGGGGCCCACTGTGTGCAGCGATGGCCAGCTGCCACTCTCTGAT
CCTTCTTGATGGGACCATCCAGGGAGACCCTCTGGACCTCAAAATGTTTGAAGCCACCACCTGGGAAATG
GCTTTTTCTGGGGACGATTTCCACATCAAGGGAGTGCCGGCACATGCCATGGTAGTTAAGCCCTGCAGAA
CAGCCAGCCAGGTCCCAGTGGAAGGAATTGCAATCCTGCATCAGTTCCCATTCTCATCGGCACTGCAAAG
AATGACAGTCATTGTCCAAGAGATGGGAGGTGACCGACTGGCATTCATGAAAGGTGCACCAGAGAGGGTG
GCCAGCTTTTGCCAACCTGAGACAGTACCCACTAGTTTTGTTAGCGAACTTCAGATTTACACGACACAGG
GCTTCCGAGTCATAGCACTGGCCTACAAGAAGCTGGAAAATGACCATCACGCTACTACCTTGACGAGGGA
GACGGTAGAATCAGACCTGATATTTCTGGGGCTGCTGATCTTGGAGAATCGATTGAAGGAAGAGACAAAA
CCTGTCTTGGAAGAGCTCATCTCAGCCCGGATAAGGACTGTAATGATCACAGGTGACAATCTTCAGACTG
CAATAACAGTGGCCAGAAAATCTGGAATGGTTTCTGAAAGCCAGAAAGTCATTCTCATTGAGGCAAATGA
AACCACCGGGTCCTCATCAGCATCTATATCTTGGACGTTAGTAGAAGAGAAGAAACACATTATGTATGGG
AATCAGGACAATTACATTAACATCAGGGATGAAGTCTCTGATAAAGGCAGAGAAGGAAGTTACCATTTTG
CCCTAACTGGAAAATCCTTTCATGTTATAAGTCAACATTTCAGCAGCCTACTGCCAAAGATATTGATCAA
TGGGACCATCTTTGCAAGAATGTCTCCTGGGCAGAAGTCCAGTCTGGTGGAAGAATTTCAGAAACTGGAT
TACTTTGTAGGTATGTGTGGTGATGGAGCCAATGACTGTGGGGCTCTGAAAATGGCTCATGTGGGCATCT
CATTATCAGAGCAGGAGGCATCTGTGGCCTCACCTTTCACTTCCAAAACTCCAAACATTGAGTGCGTACC
TCACCTTATCAAGGAAGGACGTGCAGCTCTCGTTACCTCCTTTTGCATGTTTAAGTACATGGCTCTGTAC
AGCATGATTCAGTATGTTGGTGTTCTGCTGCTCTACTGGGAGACAAACAGCCTTTCAAATTACCAGTTTC
TGTTCCAGGATCTGGCCATTACAACTCTTATTGGTGTAACAATGAATCTGAATGGTGCCTACCCTAAGCT
GGTGCCTTTCAGACCTGCAGGACGGCTGATCTCTCCACCTCTGCTACTCTCTGTGATTTTCAACATTCTT
CTCAGCCTGGCCATGCATATTGCAGGCTTCATCCTGGTTCAGAGGCAGCCTTGGTATTCCGTGGAGATAC
ACAGTGCCTGCACAGTACAAAATGAAAGCATCTCAGAGTTAACCATGTCTCCAACTGCTCCAGAAAAAAT
GGAAAGTAATAGCACCTTCACAAGTTTTGAGAACACTACAGTCTGGTTCTTGGGAACAATCAACTGTATC
ACTGTGGCTCTTGTGTTCTCTAAAGGAAAACCATTTAGACAGCCAACTTATACAAACTATATATTTGTCC
TTGTGCTGATAATACAGCTTGGTGTATGTCTATTCATTCTATTTGCTGATATACCAGAATTATATAGACG
TTTGGATCTGCTCTGCACTCCCGTCCTGTGGAGGGCCTCCATTGTCATCATGCTCAGCTTGAATTTCATT
GTGTCCCTTGTGGCCGAGGAGGCTGTTATTGAAAATCGAGCCCTGTGGATGATGATTAAAAGATGTTTCG
GCTATCAGTCAAAAAGCCAGTATCGGATATGGCAGAGGGACTTGGCAAATGACCCTAGTTGGCCCCCGCT
AAACCAAACCTCCCACTCTGACATGCCGGAGTGTGGCAGAGGAGTGTCTTACAGCAATCCAGTATTTGAG
AGCAATGAAGAACAACTCTGA

Translation (1196 aa):
MGHFEKGQHALLNEGEENEMEIFGYRTQGCRKSLCLAGSIFSFGILPLVFYWRPAWHVWAHCVPCSLQEA
DTVLLRTTDEFQIYSWKKVIWIYLSALNSAFGLTPDHPLMTDEEYIINRAIRKPDLKVRCIKVQKIRYVW
NYLEGQFQKIGSLEDWLSSAKIHQKFGSGLTREEQEIRRLICGPNTIDVEVTPIWKLLIKEVLNPFYIFQ
LFSVCLWFSEDYKEYAFAIIIMSIISISLTVYDLREQSVKLHHLVESHNSITVSVCGRKAGVQELESRVL
VPGDLLILTGNKVLMPCDAVLIEGSCVVDEGMLTGESIPVTKTPLPKMDSSVPWKTQSEADYKRHVLFCG
TEVIQAKAACSGTVRAVVLQTGFNTAKGDLVRSILYPKPVNFQLYRDAIRFLLCLVGTATIGMIYTLCVY
VLSGEPPEEVVRKALDVITIAVPPALPAALTTGIIYAQRRLKKRGIFCISPQRINVCGQLNLVCFDKTGT
LTRDGLDLWGVVSCDRNGFQEVHSFASGQALPWGPLCAAMASCHSLILLDGTIQGDPLDLKMFEATTWEM
AFSGDDFHIKGVPAHAMVVKPCRTASQVPVEGIAILHQFPFSSALQRMTVIVQEMGGDRLAFMKGAPERV
ASFCQPETVPTSFVSELQIYTTQGFRVIALAYKKLENDHHATTLTRETVESDLIFLGLLILENRLKEETK
PVLEELISARIRTVMITGDNLQTAITVARKSGMVSESQKVILIEANETTGSSSASISWTLVEEKKHIMYG
NQDNYINIRDEVSDKGREGSYHFALTGKSFHVISQHFSSLLPKILINGTIFARMSPGQKSSLVEEFQKLD
YFVGMCGDGANDCGALKMAHVGISLSEQEASVASPFTSKTPNIECVPHLIKEGRAALVTSFCMFKYMALY
SMIQYVGVLLLYWETNSLSNYQFLFQDLAITTLIGVTMNLNGAYPKLVPFRPAGRLISPPLLLSVIFNIL
LSLAMHIAGFILVQRQPWYSVEIHSACTVQNESISELTMSPTAPEKMESNSTFTSFENTTVWFLGTINCI
TVALVFSKGKPFRQPTYTNYIFVLVLIIQLGVCLFILFADIPELYRRLDLLCTPVLWRASIVIMLSLNFI
VSLVAEEAVIENRALWMMIKRCFGYQSKSQYRIWQRDLANDPSWPPLNQTSHSDMPECGRGVSYSNPVFE
SNEEQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH