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Report for CCDS4071.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4071.2 Public Homo sapiens 5 SLF1 24 110 108 CCDS HistoryNCBI Gene:84250Re-query CCDS DB by CCDS ID:4071.2See the combined annotation on chromosome 5 in Sequence Viewer

Public Note for CCDS 4071.1
The coding region has been updated to significantly extend the N-terminus based on available transcript and homology data. The update adds two BRCT (breast cancer carboxy-terminal) domains to the protein.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 4071.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265140.10 ENSP00000265140.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000265140.10Link to Ensembl Protein Viewer:ENSP00000265140.5Re-query CCDS DB by Nucleotide ID:ENST00000265140Re-query CCDS DB by Protein ID:ENSP00000265140
Original member Current member NCBI NM_032290.4 NP_115666.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032290.4Link to Protein Sequence:NP_115666.2Re-query CCDS DB by Nucleotide ID:NM_032290Re-query CCDS DB by Protein ID:NP_115666Link to BLAST:NP_115666.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115666.2 1058 Q9BQI6-1 1058 100% 0 0

Chromosomal Locations for CCDS 4071.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 94628811 94628924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94629092 94629167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94630503 94630743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94643273 94643435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94649454 94649597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94651702 94651845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94653272 94653421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94654630 94654752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94662298 94662351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94663750 94663908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94665861 94666024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94670151 94670279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94670843 94671008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94678808 94678955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94686573 94686718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94688506 94688669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94689473 94689606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94691564 94691656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94692074 94692256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 94694831 94695312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3177 nt):
ATGGAAGATGGTACCCCAAAGCATATCATCCAGATGACAGGATTTAAGATGGAAGAAAAAGAAGCGCTAG
TCAAATTACTTTTAAAACTAGATTGCACTTTTATTAAGAGTGAGAAATACAAAAATTGTACACATCTTAT
AGCTGAACGCCTATGTAAGAGTGAAAAATTTTTAGCAGCTTGTGCGGCAGGAAAGTGGATACTAACCAAG
GACTATATAATTCATAGTGCCAAAAGTGGCAGATGGCTTGATGAAACAACTTATGAATGGGGATATAAAA
TTGAAAAAGATTCCCGTTATTCACCTCAAATGCAATCTGCACCTAAAAGATGGCGTGAAGAACTGAAACG
CACTGGTGCTCCAGGAGCCTTCCACAGATGGAAAGTTGTCCTCCTTGTTAGAACTGATAAGCGAAGTGAT
TCTCTTATAAGAGTTTTGGAGGCTGGAAAGGCAAATGTTATTTTACCAAAAAGTTCACCAAGTGGAATAA
CTCATGTGATTGCCAGTAATGCAAGAATTAAAGCTGAGAAAGAAAAAGATAACTTTAAGGCTCCATTTTA
TCCAATTCAGTATCTAGGGGATTTTCTTTTAGAGAAAGAAATTCAGAATGATGAAGATTCCCAAACCAAT
TCTGTTTGGACTGAACATAGCAATGAAGAAACAAACAAAGATTTCAGGAAAGATGCAGGATTTCTTGAAA
TGAAAGGTGCCTTAAGAGAGACCATGTATAGAACCCAGAAAGAAATGCAAAATCATGAAGATGTTAATGT
TGGTTCTATTTTGATTCAACATCACAAAAAAGAAAAATTCAGTGGTTCCAGTAAAGATTTGAAATTTGTT
AAAATGAGAAATACCTTTGGAAGCCATACATATGAAAATCAGAAGGAAATTAAGAAAAAAGATGAAGATA
TTCAGAGGAGTTATACTTTGAGGAGAAAACGCAAGAAAGGAAAAGAAAGCAATTGCAAGAAAGGCGTTGA
ACATGAAAAAATAAAAAGTACCTTAAGAAGGCACATATATAATAGAGATCAGAAAGAAATGAAGAATTCT
ATTTTTGCTGAATATGCCAAAGAATCAAAAGCCATGGCTATTAAGACAGATGTGGATGTTGTTGAAATAA
AAAATACCTTAAGGAAGCACATATATAGAGCTCAGGCTGTCAGATACAACTGCATTAGAATAGATAAACA
ACCAGTGTACAACGTAGAGGTTAAAAATGCTGAATTTCCCAGAGGTGTATTAAATTTAATTGAAAGCCTC
ATAGAAGGACATTTTTTTAAAGAAGCAATTGAGGAACTTTCCACTTTGCAGGCACATTATATCCCTCCTG
TATGCGTTCTTCATGCCCTTCTAGAGAACGTTCTACAGGATAACATAGATACATTTTCTGGTCGATACTT
TCATATATTGTCAGCTCTTCTTCACCTGCATCCTCCTTGGAAGTCTCCAGCCATGTCGAGATATTATTTA
GAGTTGTTTCAGTGTCCAACTTGTATGAAAGGAGCATGGTCTTTAGTAGAAGTCCTTATCAGGTCTTGCC
TTTTCAATGAAAGCTTTTGTCATCAAATTTCAGAAAATATTGGCTCCAAGGTGCTCCACCTGACGCTACT
CAAATTTTTCTTTAATTTAATTGAAAGTGAAGTACAACATCTGAGTCAAAAGTTGTATGACTGGTCAGAT
TCTCAGAATCTGAAAATAACAGGAAAGGCAATGCTTCTTGAAATTTTTTGGTCAGGAAGTGAAACCTCTG
GGCTTTTGACCAAACCAGTAAATATGCTTTTGGAATGGACTATATATTCTCACAAGGAAAAATTCAAGTC
TAATGATGTCTTCAAACATGAACTAGCTTACTTATTGGCTGGAATTCTTGGAGCAGCAATAGATTATTGG
ATTTTCCTTGGTCTTAAGATGGGTAGAAATGTGATGCGACACATGTCTGATGACTTAGGAAGTTATGTTT
CTCTTTCGTGTGATGACTTTTCTTCACAGGAATTAGAGATTTTCATTTGCTCCTTTTCCTCCTCCTGGCT
TCAAATGTTTGTTGCAGAGGCAGTCTTTAAAAAGTTGTGTCTACAGAGCTCTGGCAGTGTTTCTTCTGAG
CCACTCTCTCTTCAGAAAATGGTATATTCCTATTTACCAGCCTTGGGGAAAACTGGTGTGCTTGGGTCTG
GAAAGATTCAGGTGTCAAAGAAAATAGGACAGCGGCCTTGTTTTGACTCTCAGAGAACCTTACTAATGCT
GAATGGTACTAAACAAAAACAAGTCGAAGGGCTGCCAGAGTTACTAGACCTGAACCTTGCTAAATGTTCC
TCATCATTAAAAAAATTGAAAAAGAAGTCAGAAGGAGAATTGTCATGTTCCAAGGAGAATTGCCCCTCTG
TAGTTAAAAAGATGAATTTTCACAAGACTAATCTAAAAGGAGAAACAGCCCTGCATAGAGCTTGCATAAA
TAACCAAGTGGAGAAATTGATTCTTCTTCTCTCTTTGCCAGGAATAGACATCAATGTTAAAGACAATGCT
GGCTGGACGCCTTTGCATGAAGCCTGTAACTATGGCAACACAGTGTGTGTCCAGGAAATTTTGCAACGTT
GTCCAGAGGTAGATCTGCTCACTCAAGTGGACGGGGTGACTCCTTTGCATGATGCACTGTCAAACGGACA
TGTAGAAATTGGCAAGCTGCTACTACAGCATGGGGGCCCAGTGCTTTTACAACAGAGGAATGCTAAGGGA
GAATTGCCCTTGGATTATGTGGTTTCACCTCAAATCAAAGAAGAACTGTTTGCTATTACAAAAATAGAAG
ATACAGTGGAGAACTTTCATGCACAAGCAGAGAAACATTTTCATTACCAGCAACTTGAATTTGGCTCCTT
TTTACTTAGTAGGATGTTGCTAAATTTTTGTTCAATTTTTGATTTATCTTCAGAGTTCATTTTAGCTTCC
AAAGGGTTAACTCATCTAAATGAACTGCTTATGGCTTGTAAAAGTCATAAAGAAACCACCAGTGTTCATA
CTGACTGGTTACTGGATCTTTATGCTGGAAATATAAAGACATTGCAGAAACTCCCACACATTCTTAAGGA
ACTGCCTGAGAATTTGAAAGTGTGTCCTGGGGTACACACTGAGGCCTTGATGATAACATTGGAAATGATG
TGTCGGTCAGTCATGGAGTTTTCATGA

Translation (1058 aa):
MEDGTPKHIIQMTGFKMEEKEALVKLLLKLDCTFIKSEKYKNCTHLIAERLCKSEKFLAACAAGKWILTK
DYIIHSAKSGRWLDETTYEWGYKIEKDSRYSPQMQSAPKRWREELKRTGAPGAFHRWKVVLLVRTDKRSD
SLIRVLEAGKANVILPKSSPSGITHVIASNARIKAEKEKDNFKAPFYPIQYLGDFLLEKEIQNDEDSQTN
SVWTEHSNEETNKDFRKDAGFLEMKGALRETMYRTQKEMQNHEDVNVGSILIQHHKKEKFSGSSKDLKFV
KMRNTFGSHTYENQKEIKKKDEDIQRSYTLRRKRKKGKESNCKKGVEHEKIKSTLRRHIYNRDQKEMKNS
IFAEYAKESKAMAIKTDVDVVEIKNTLRKHIYRAQAVRYNCIRIDKQPVYNVEVKNAEFPRGVLNLIESL
IEGHFFKEAIEELSTLQAHYIPPVCVLHALLENVLQDNIDTFSGRYFHILSALLHLHPPWKSPAMSRYYL
ELFQCPTCMKGAWSLVEVLIRSCLFNESFCHQISENIGSKVLHLTLLKFFFNLIESEVQHLSQKLYDWSD
SQNLKITGKAMLLEIFWSGSETSGLLTKPVNMLLEWTIYSHKEKFKSNDVFKHELAYLLAGILGAAIDYW
IFLGLKMGRNVMRHMSDDLGSYVSLSCDDFSSQELEIFICSFSSSWLQMFVAEAVFKKLCLQSSGSVSSE
PLSLQKMVYSYLPALGKTGVLGSGKIQVSKKIGQRPCFDSQRTLLMLNGTKQKQVEGLPELLDLNLAKCS
SSLKKLKKKSEGELSCSKENCPSVVKKMNFHKTNLKGETALHRACINNQVEKLILLLSLPGIDINVKDNA
GWTPLHEACNYGNTVCVQEILQRCPEVDLLTQVDGVTPLHDALSNGHVEIGKLLLQHGGPVLLQQRNAKG
ELPLDYVVSPQIKEELFAITKIEDTVENFHAQAEKHFHYQQLEFGSFLLSRMLLNFCSIFDLSSEFILAS
KGLTHLNELLMACKSHKETTSVHTDWLLDLYAGNIKTLQKLPHILKELPENLKVCPGVHTEALMITLEMM
CRSVMEFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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