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Report for CCDS24228.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24228.1 Public Mus musculus 10 Agap2 23 108 98 CCDS HistoryNCBI Gene:216439Re-query CCDS DB by CCDS ID:24228.1Re-query CCDS DB by GeneID:216439See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24228.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039259.6 ENSMUSP00000043466.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039259.6Link to Ensembl Protein Viewer:ENSMUSP00000043466.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000039259Re-query CCDS DB by Protein ID:ENSMUSP00000043466
Original member Current member NCBI NM_001033263.5 NP_001028435.1 Accepted alive Link to Nucleotide Sequence:NM_001033263.5Link to Protein Sequence:NP_001028435.1Re-query CCDS DB by Nucleotide ID:NM_001033263Re-query CCDS DB by Protein ID:NP_001028435Link to BLAST:NP_001028435.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028435.1 1186 Q3UHD9-1 1186 100% 0 0

Chromosomal Locations for CCDS 24228.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 127079622 127080771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127082364 127082422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127082966 127083053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127083208 127083293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127083431 127083578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127085113 127085247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127085551 127085660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127086927 127087085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127087234 127087320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127087402 127087506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127087885 127088047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127088209 127088328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127089230 127089358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127090142 127090201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127090427 127090575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127090672 127090762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127090875 127091097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127091193 127091448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127091570 127091812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3561 nt):
ATGAGCCGGGGCGCGGGCGCGCTTCAGCGCCGGACAACGACCTACCTCATCTCGCTGACCCTGGTCAAGC
TCGAGTCGGTACCTCCGCCGCCGCCTTCTCCATCTGCAGCCGCAGCCGGCGCCCCCGGGGCCAGAGGCTC
CGAGCCCCGAGATCCTGGCAGCCCCCGAGGCTCGGAGGAACCCGGCAAGAAGCGGCACGAGCGTCTCTTC
CACCGGCAGGATGCGCTGTGGATCAGTACCAGCAGCGCAGGCACCGGGGGTGCGGAGCCCCCCGCGCTGT
CCCCGGCTCCGGCCAGTCCGGCTCGCCCGGTCTCCCCGGCTCCGGGCCGCCGACTGTCCCTATGGGCCGC
CCCTCCGGGACCCCCGCTCTCCGGGGGGCTGAGCCCGGACTCCAAGCCGGGAGGCGCCCCCTCTTCCTCC
CGGCGCCCTCTACTCAGCAGCCCGAGCTGGGGGGGTCCGGAACCTGAAGGCCGGACGGGTGGCGGAGTCC
CGGGCTCGTCCTCCCCGCATCCTGGCACCGGTAGCCGAAGGCTCAAGGTGGCGCCTCCTCCACCTGCTCC
CAAGCCTTTCAAGACCGTGACCACTAGTGGAGCCAAAGCCGGCGGGGGCAAGGGCGCAGGCAGCCGCCTG
TCATGGCCCGAAAGCGAGGGCAAACCCAGGGTCAAGGGGTCAAAGAGCACCGCCGGGACTGGAGCTTCTG
CCGCTGCGGCCGGCGGGGGAGGGAGCGCTGCAGTCACGACCTCTGGTGGGGTCGGGGCTGGGGCTGGAAC
CAGAGGGAAGTTGTCCCCTCGGAAAGGCAAGAGTAAGACCTTGGACAATAGTGACTTACACCCAGGACCC
AGTGCCGGCTCTCCTCCGCTCACCGTGCCAGCAATCCCAGTTCCAGCCACTTCTGTCACTGCCACCTCCA
CGCAGCCCCTCGGGCCTGCACCCCCTATCACTCTGGAGCCACCAGCTCCAGGGCTGAAAAGGGGCCGGGA
GGGCGGCCGAGCGTCCACTCGTGACCGCAAGATGCTCAAGTTTATCAGCGGTATCTTCACCAAGAGCACA
GGAGGGCCTCCTGGTCCAGGGCCCCTTCCCGGACCCCAAGGCTTGTCTTCCAGCAGCGGGTCCAGGGAGC
TGCTGGGAGCAGAACTACGCACCTCCCCTAAGGCTGTGGTTAATAGCCAGGAATGGACTTTGAGCCGATC
AATTCCCGAACTGCGCCTGGGTGTGCTGGGTGATGTCAGGAGTGGGAAGTCGTCCCTCATCCATAGATTC
CTCACGGGTTCATACCAGGTGCTGGAGAAGATTGAGAGTGAGCAGTACAAGAAGGAGATGCTAGTGGATG
GGCAGACCCATCTGGTGCTGATCCGGGAGGAAGCAGGGGCACCCGATGCCAAGTTCTCAGGCTGGGCAGA
TGCTGTGATCTTCGTCTTCAGCCTGGAGGATGAGAGCAGCTTCCAGGCTGTGAGCCGTCTCCATGGGCAG
CTGAGCTCCCTCCGGGGGGAGGGGCGAGGAGGTCTGGCCCTGGCTCTGGTTGGGACCCAAGACAGGATCA
GTGCATCATCTCCTCGAGTGGTGGGTGATGCTCGAGCCAGGGCTCTGTGCACGGACATGAAGCGCTGTAG
CTACTACGAGACCTGCGCAACCTATGGGCTCAATGTGGACCGGGTCTTCCAGGAGGTGGCCCAGAAGGTG
GTGACCTTGCGCAAACAACAACAACTCCTGGCTGCTTGCAAATCCCTGCCTAGCTCGCCAAGCCATTCAG
CTGCATCTACTCCTGTAGCTGGGCAGGCTAGTAACGGGGGCCACACTAGCGACTACTCTTCTTCCCTCCC
ATCCTCACCCAACGTTGGACACCGGGAGCTCCGAGCTGAGGCAGCTGCGGTGGCTGGGTTGAGTACCCCA
GGGTCCTTACACAGAGCAGCCAAGCGGCGGACCAGCCTTTTTGCGAACCGTCGGGGCAGCGATGCTGAGA
AGCGGAGCTTAGACAGCCGGGGAGAGACAACAGGGAGTGGGCGAGCCATCCCCATCAAACAGAGCTTCCT
GCTAAAACGAAGTGGCAATTCCTTGAACAAAGAATGGAAGAAGAAATATGTGACCTTGTCCAGCAATGGC
TTTCTACTCTACCACCCCAGCATTAATGACTACATCCACAGTACACATGGCAAAGAGATGGACTTGTTAC
GAACAACGGTCAAAGTCCCAGGCAAGCGGCCCCCAAGGGCTATCTCTGCTTTCGGCCCCTCAGCCAGCAT
CAACGGGTTGGTCAAGGATATGAGCACCGTCCAGATGGGTGAAGGCCCTGAAGCCTCTACTCCCATGCCA
AGCCCCAGCCCTAGCCCCAGTTCCCTGCAGCTTCCAACAGACCAGACATCCAAGCACCTCTTGAAGCCAG
ACCGGAATTTGGCCCGTGCCCTTAGCACCGACTGTACCCCATCTGGAGATCTGAGTCCCCTGAGTCGGGA
ACCCCCACCTTCGCCCATGGTGAAGAAGCAGAGGAGGAAGAAACTGTCCACGCCTTCTAAGACTGAAGGC
TCGGCTGTGCAAGCTGAAGCCAAGCGCAAAATGTGGAAACTAAAATCCTTTGGTAGTTTAAGAAATATTT
ATAAAGCAGAGGAAAACTTTGAGTTCCTGATCGTGTCCAGCACTGGTCAGACGTGGCACTTTGAGGCAGC
CAGCTTTGAGGAGCGGGATGCTTGGGTTCAGGCCATTGAGAGTCAGATCCTGGCCAGTCTGCAGTGCTGT
GAGAGCAGCAAGGTCAAGCTGCGCACTGACAGCCAAAGCGAAGCTGTGGCCATCCAGGCGATCCGCAACG
CAAAGGGAAACTCGACCTGTGTGGACTGTGGAGCTCCCAACCCCACGTGGGCCAGTTTGAATCTGGGCGC
ACTCATCTGCATCGAGTGTTCTGGCATCCACCGGAACCTGGGCACACACCTGTCCCGAGTGCGTTCACTG
GATTTGGATGACTGGCCGCGGGAGCTGACCCTGGTGCTGACGGCCATTGGCAACGACACAGCCAACCGCG
TGTGGGAGAGCGACACTCGAGGCCGTGCCAAGCCTACACGGGACTCTTCGCGGGAGGAGCGTGAGTCGTG
GATTCGCGCCAAGTATGAGCAGCTGCTGTTCCTGGCGCCTCTGGGCACCACGGAGGAGCCGCTGGGCCGC
CAACTGTGGGCCGCTGTGGAGGCCCAGGACGTGGCCGCCGTTCTGCTGCTTCTGGCCCACGCGCGACATG
GGCCGCTCGACACCAGCGTGGAGGACCCGCAGCTCCGCTCGCCGCTGCACTTGGCGGCCGAGCTCGCCCA
CGTTGTCATTACACAGCTGCTGTTGTGGTATGGCGCAGACGTGGCGGCCCGCGATGCGCAAGGCCGCACG
GCACTGTTCTATGCCCGCCAGGCTGGCAGCCAGCTGTGTGCAGACATCCTTCTCCAGCACGGCTGCCCGG
GAGAGGGCGGCAGCACGGCCACCACGCCCAGCGCGGCCACCACCCCCAGCATTACCGCCACGCCCAGCCC
GAGGCGCCGGAGCAGTGCTGCCAGCTTGGGCCGCGTGGACACCACGATCGCGCTGGTATAG

Translation (1186 aa):
MSRGAGALQRRTTTYLISLTLVKLESVPPPPPSPSAAAAGAPGARGSEPRDPGSPRGSEEPGKKRHERLF
HRQDALWISTSSAGTGGAEPPALSPAPASPARPVSPAPGRRLSLWAAPPGPPLSGGLSPDSKPGGAPSSS
RRPLLSSPSWGGPEPEGRTGGGVPGSSSPHPGTGSRRLKVAPPPPAPKPFKTVTTSGAKAGGGKGAGSRL
SWPESEGKPRVKGSKSTAGTGASAAAAGGGGSAAVTTSGGVGAGAGTRGKLSPRKGKSKTLDNSDLHPGP
SAGSPPLTVPAIPVPATSVTATSTQPLGPAPPITLEPPAPGLKRGREGGRASTRDRKMLKFISGIFTKST
GGPPGPGPLPGPQGLSSSSGSRELLGAELRTSPKAVVNSQEWTLSRSIPELRLGVLGDVRSGKSSLIHRF
LTGSYQVLEKIESEQYKKEMLVDGQTHLVLIREEAGAPDAKFSGWADAVIFVFSLEDESSFQAVSRLHGQ
LSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCTDMKRCSYYETCATYGLNVDRVFQEVAQKV
VTLRKQQQLLAACKSLPSSPSHSAASTPVAGQASNGGHTSDYSSSLPSSPNVGHRELRAEAAAVAGLSTP
GSLHRAAKRRTSLFANRRGSDAEKRSLDSRGETTGSGRAIPIKQSFLLKRSGNSLNKEWKKKYVTLSSNG
FLLYHPSINDYIHSTHGKEMDLLRTTVKVPGKRPPRAISAFGPSASINGLVKDMSTVQMGEGPEASTPMP
SPSPSPSSLQLPTDQTSKHLLKPDRNLARALSTDCTPSGDLSPLSREPPPSPMVKKQRRKKLSTPSKTEG
SAVQAEAKRKMWKLKSFGSLRNIYKAEENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQILASLQCC
ESSKVKLRTDSQSEAVAIQAIRNAKGNSTCVDCGAPNPTWASLNLGALICIECSGIHRNLGTHLSRVRSL
DLDDWPRELTLVLTAIGNDTANRVWESDTRGRAKPTRDSSREERESWIRAKYEQLLFLAPLGTTEEPLGR
QLWAAVEAQDVAAVLLLLAHARHGPLDTSVEDPQLRSPLHLAAELAHVVITQLLLWYGADVAARDAQGRT
ALFYARQAGSQLCADILLQHGCPGEGGSTATTPSAATTPSITATPSPRRRSSAASLGRVDTTIALV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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