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Report for CCDS23345.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23345.1 Public Mus musculus 9 Tmod2 23 108 98 CCDS HistoryNCBI Gene:50876Re-query CCDS DB by CCDS ID:23345.1Re-query CCDS DB by GeneID:50876See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23345.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064433.10 ENSMUSP00000069956.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064433.10Link to Ensembl Protein Viewer:ENSMUSP00000069956.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000064433Re-query CCDS DB by Protein ID:ENSMUSP00000069956
Original member Current member EBI ENSMUST00000098552.9 ENSMUSP00000096152.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098552.9Link to Ensembl Protein Viewer:ENSMUSP00000096152.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000098552Re-query CCDS DB by Protein ID:ENSMUSP00000096152
Original member Current member EBI ENSMUST00000164100.1 ENSMUSP00000126739.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164100.1Link to Ensembl Protein Viewer:ENSMUSP00000126739.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164100Re-query CCDS DB by Protein ID:ENSMUSP00000126739
Original member Current member EBI ENSMUST00000215614.1 ENSMUSP00000150413.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215614.1Link to Ensembl Protein Viewer:ENSMUSP00000150413.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215614Re-query CCDS DB by Protein ID:ENSMUSP00000150413
Original member Current member EBI ENSMUST00000215036.1 ENSMUSP00000150750.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215036.1Link to Ensembl Protein Viewer:ENSMUSP00000150750.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215036Re-query CCDS DB by Protein ID:ENSMUSP00000150750
Original member Current member NCBI NM_001038710.1 NP_001033799.1 Accepted alive Link to Nucleotide Sequence:NM_001038710.1Link to Protein Sequence:NP_001033799.1Re-query CCDS DB by Nucleotide ID:NM_001038710Re-query CCDS DB by Protein ID:NP_001033799Link to BLAST:NP_001033799.1
Original member Current member NCBI NM_016711.3 NP_057920.2 Accepted alive Link to Nucleotide Sequence:NM_016711.3Link to Protein Sequence:NP_057920.2Re-query CCDS DB by Nucleotide ID:NM_016711Re-query CCDS DB by Protein ID:NP_057920Link to BLAST:NP_057920.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001033799.1 351 Q9JKK7-1 351 100% 0 0
NP_057920.2 351 Q9JKK7-1 351 100% 0 0

Chromosomal Locations for CCDS 23345.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 75574089 75574123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75576646 75576790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75577109 75577252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75581830 75581937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75586048 75586178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75587890 75587976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75592563 75592685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75594921 75595077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75597210 75597335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1056 nt):
ATGGCGCTCCCCTTTCAAAAAGGGCTGGAGAAATACAAGAACATCGACGAAGACGAGCTTCTTGGCAAAC
TCTCAGAAGAGGAACTGAAACAGTTGGAAAATGTTCTAGATGACCTAGATCCCGAGAGTGCAACGCTACC
TGCTGGATTCCGACAGAAAGACCAGACCCAGAAAGCAGCCACTGGCCCATTTGACCGAGAACACCTGCTC
ATGTACCTGGAGAAAGAGGCTTTGGAACAGAAGGACAGGGAGGACTTTGTACCCTTCACAGGAGAAAAGA
AAGGGAGAGTCTTTATCCCCAAGGAAAAGCCTGTAGAAACTCGGAAAGAAGAGAAAGTGACCCTGGACCC
AGAACTGGAGGAAGCCTTGGCCAGTGCCTCAGACACTGAACTCTACGACCTTGCAGCTGTCCTCGGAGTC
CACAATTTGCTCAACAATCCGAAGTTTGATGAAGAGACGACCAACGGCGAAGGTCGCAAGGGGCCTGTGA
GGAATGTCGTGAAAGGTGAAAAGGCCAAGCCAGTATTTGAGGAGCCACCGAACCCCACAAATGTGGAGGC
AAGCCTGCAGCAGATGAAGGCCAACGACCCCAGCCTGCAGGAGGTCAACCTCAACAACATTAAGAACATT
CCAATTCCAACCCTGAAGGAATTTGCAAAGTCTCTGGAGACCAACACCCATGTGAAGAAGTTCAGCCTGG
CTGCAACCCGCAGCAATGACCCTGTGGCCCTTGCCTTTGCAGAGATGCTGAAAGTCAACAAGACCTTGAA
AAGTCTAAACGTAGAGTCCAATTTTATCACTGGCACTGGAATCCTGGCCCTGGTGGAAGCGCTGCGGGAG
AATGACACCTTGACGGAGATCAAGATTGACAACCAGAGGCAGCAGTTGGGAACAGCTGTGGAGATGGAGA
TCGCCCAGATGCTGGAGGAGAACTCAAGGATCCTCAAGTTTGGGTACCAGTTTACCAAGCAAGGGCCACG
GACAAGAGTGGCAGCTGCCATCACAAAAAATAATGACCTGGTTCGAAAGAAGAGAGTTGAAGGAGACAGG
AGGTAA

Translation (351 aa):
MALPFQKGLEKYKNIDEDELLGKLSEEELKQLENVLDDLDPESATLPAGFRQKDQTQKAATGPFDREHLL
MYLEKEALEQKDREDFVPFTGEKKGRVFIPKEKPVETRKEEKVTLDPELEEALASASDTELYDLAAVLGV
HNLLNNPKFDEETTNGEGRKGPVRNVVKGEKAKPVFEEPPNPTNVEASLQQMKANDPSLQEVNLNNIKNI
PIPTLKEFAKSLETNTHVKKFSLAATRSNDPVALAFAEMLKVNKTLKSLNVESNFITGTGILALVEALRE
NDTLTEIKIDNQRQQLGTAVEMEIAQMLEENSRILKFGYQFTKQGPRTRVAAAITKNNDLVRKKRVEGDR
R


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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