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Report for CCDS20491.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20491.1 Public Mus musculus 6 Iqsec3 23 108 98 CCDS HistoryNCBI Gene:243621Re-query CCDS DB by CCDS ID:20491.1Re-query CCDS DB by GeneID:243621See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20491.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046373.7 ENSMUSP00000038653.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046373.7Link to Ensembl Protein Viewer:ENSMUSP00000038653.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000046373Re-query CCDS DB by Protein ID:ENSMUSP00000038653
Original member NCBI NM_001033354.3 NP_001028526.1 Updated not alive Link to Nucleotide Sequence:NM_001033354.3Link to Protein Sequence:NP_001028526.1Re-query CCDS DB by Nucleotide ID:NM_001033354Re-query CCDS DB by Protein ID:NP_001028526
Current member NCBI NM_001033354.4 NP_001028526.1 Accepted alive Link to Nucleotide Sequence:NM_001033354.4Link to Protein Sequence:NP_001028526.1Re-query CCDS DB by Nucleotide ID:NM_001033354Re-query CCDS DB by Protein ID:NP_001028526Link to BLAST:NP_001028526.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028526.1 1195 Q3TES0 1195 100% 0 0

Chromosomal Locations for CCDS 20491.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 121376070 121376531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121379995 121380044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121381649 121381741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121383915 121384076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121384202 121384301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121386573 121386698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121387734 121387873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121389467 121389633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121390000 121390122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121410614 121410775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121412508 121413616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121428297 121428567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121444157 121444240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 121473025 121473563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3588 nt):
ATGGAGAGCCTGCTGGAGAACCCGGTGCGCGCCGTGCTCTACCTCAAGGAGCTCACGGCCATCGTGCAGA
ACCAGCAAAGCCTCATCCATACCCAGCGCCAGCGCATCGATGAGCTGGAGCGGCGTCTAGACGAGCTGAG
CGCGGAGAACCGCAGCCTGTGGGAACACCAGCAGTTGCTGCAAGCCCAGCCTCCGCCTGGGCTGGTTCCC
CCGCCGCCGTCTGCCCCACTGCCTGCTCCTGCAGTCACTGCTCCGGCCGCCGCTGCGGCCCAGGAACCGC
TTCAGGACCACGGACAGCTCATACCCGCTTCACCGGAGCCGCCGCTTCAGCACCACGGTCAGCTCCTGGC
GCAGCCCCAACCTGCACCCAGCAGCAGGGTTCAGACTCCTCAGTCGCCCCACCAGCACCCGGTGGCACCC
GGGGCCATAGCTGACAAGGAGAAGGAGCGTCCCTCGAGTTGTTGTGCTGCCGCGGGAGCCCTGCTTCAAC
ACGCATCCCCCGCCGCCCTCGGCAAGGGCGTCCTGAGCAGGAGACCCGAGAATGAGACTGTGCTACACCA
ATTCTGCTGCCCTGCCGCTGACACCGAGCAGAAGCCTGCCTGCTCCGACCTGGCTTCCCAAAGTGATGGC
TCCTGTGCCCAGGCCGGTGGGGGCATGGAGGACTCCGTGGTGGCAGCGGTGGCAGCCGGCAGACCCAGTG
CCCATGCCCCGAAGGCTCAAGCCCCGGAGCTACAGCAGGAGGAGGAGCGGCCAGGGGCAGTGGGCTCCCC
ACGGGCTGGCCCCCTCCGCGCGGCCTCTCCTGGCCGGCAGCAGCCTGCCCTGGCGACGGCGCTCTGCTCC
CACACTCCTGCTGCCTCCGAATACGAACTCTCCCTTGACCTAAAGAATAAACAGATTGAAATGCTAGAAC
ACAAATACGGGGGCCACCTGGTATCCCGACGCGCCGCGTGCACCATTCAAACCGCTTTTCGCCAGTACCA
GCTCAGCAAGAACTTTGAGAAGATCCGTAACTCGCTCCTGGAGAGCCGCCTGCCTCGGCGGATCTCACTG
CGCAAGGTGAGGGCGCCCACAGCGGAGAGTCTGGTGGCAGAGAAGGCGCTCCTGGAGGGCTGTGGGCTCC
TTGGGCTCCCGCTGGGGCGCTCGCCCTCGCTGCCGCCCACCTTCGCTGGCTCGCTCACCGAGCTGGAGGA
CTCCTTTACCGAGCAGGTGCAGTCCCTGGCCAAGTCCATCGACGACGCCCTCAGCACCTGGAGCCTCAAG
ACCATGTGCTCGCTGCAAGAGAGTGGCGCGTACCAGCTCCACCAGGCGCTGCACCCGAGTGCGGGACAGC
CAGGCCTGGAGACCGAGGCGGCGGCGCGGGAGCCAGAGAGCGGCCCCGGGTCTGGAGATGAGGCCGGTGG
TCTGCCTCAGGGTCACAGCGGTACCCTCATGATGGCTTTCCGGGACGTTACGGTGCAGATCGCTAACCAG
AACATCTCTGTTTCCTCCTCCACCGCCCTGTCTGTGGCCAACTGTCTGGGTGCACAGACCGCCCAGGCCA
CAGCCGAGCCTGCTGCCGCCCAAGCCGAACAAGAGGACACCGCGGATCAGGAGGTCTCGGAAGTCCCAGC
CTCGGAACAGATGGACCCACCCAGTGAGGACTCAGAGGCAGCGGAGAGCCGCGCCCAGAGCGCACAGGAA
CCCGCGGTGGCACAGGCCGTGGTGGAGGAGGCGGTGGCTACAGAGGCAGAGGAGGAAGAGGAGGGGGCCA
AACAGGCAGGGAAGGGGGCAGAGGCCGAGGGAGGCGACAACTCTGAGCAGCTGAGCAGCAGCAGCGCTTC
CACCAAGTCTGCCAAATCCAGCTCAGAGGCTTCTGCCGCTGCCTCCAAGGAGGCCCTGCAGGCTGTGATC
CTGAGCTTGCCCCGCTATCACTGCGAGAACCCAGCCAGCTGCAGGTCCCCCACGCTCTCCACAGACACCC
TGCGCAAGCGGCTGTACCGCATCGGCCTCAACCTCTTCAACATAAATCCGGACAAGGGCATCCAGTTCCT
GATCTCACGTGGCTTCATCCCTGACACCCCCATCGGTGTGGCCCACTTCCTCCTCCAGCGTAAAGGCCTC
AGCCGCCAGATGATAGGAGAGTTCCTGGGCAACAGCAAGAAGCAGTTCAACCGGGACGTGCTGGACTGTG
TGGTAGATGAGATGGACTTTTCCAACATGGAGCTGGATGAAGCCCTGAGGAAGTTTCAAGCCCACATCCG
TGTGCAGGGGGAAGCACAGAAGGTGGAGCGACTCATAGAAGCTTTCAGCCAGCGCTACTGCATGTGCAAT
CCTGAGGTGGTGCAACAGTTCCACAACCCAGACACCATCTTCATCCTGGCCTTTGCCATCATCCTTCTCA
ACACCGACATGTACAGCCCCAACATCAAGCCTGACCGGAAGATGATGCTAGAAGACTTTATCCGGAACCT
CCGAGGTGTGGATGATGGTGCAGACATCCCCAGAGAACTGGTGGTAGGCATCTATGAGAGGATCCAGCAA
AAGGAGCTCAAATCCAATGAGGACCATGTCACATATGTCACCAAGGTGGAGAAGTCCATCGTGGGCATGA
AGACGGTGCTGTCAATGCCACACCGTCGCCTGGTCTGCTGTAGCCGGCTCTTCGAGGTGACCGATGTGAA
CAAGCTACAGAAACAAGCAGCACACCAGAGAGAAGTGTTCCTCTTCAATGATCTGCTTGTGATTCTCAAG
CTATGCCCAAAGAAGAAGAGCTCCTTCACGTACACCTTCTGCAAGGCAGTCGGCCTGTTAGGCATGCGCT
TTCACCTCTTCGAGAACGAGTATTACTCCCATGGCATCACCCTGGCAACCCCACTCTCGGGCTCCGAGAA
GAAGCAGGTGCTGCACTTCTGTGCCCTGGGCTCCGACGAGATGCAGAAGTTCGTGGAAGACCTGAAGGAG
TCCATCGCTGAGGTGACAGAGCTGGAGCAGATCCGGATAGAATGGGAACTGGAGAAGCAGCAGGGCACAA
AGACTCTCTCCGTAAGGTCTGCTGGAGCCCAAGGGGACCCACAGTCGAAGCAAGGATCACCCACAGCCAA
GAGGGAGGCGATGGCAGGAGAGAAAGCGGCGGAGAGCTCGGGGGAGGTGTCAATTCACAACAGGCTTCAA
ACGTCCCAGCACAGCCCCAAGTTGGGGGTCGAGAGGGGAGCGCCTGCACCATCACCACCAACATCACCAC
CGCCGTTGCCGCCAGACCCACAGCCTAGCCCCCTGAGGGAGCAGCCCCCACCGCTGCCACTGCCACCACC
CACACCTCCAGGCACCCTGGTACAGTGCCAGCAGATTGTCAAGGTCATTGTCCTGGACAAACCCTGCTTG
GCCCGCATGGAGCCCCTGCTGAGCCAGGCTCTGTCCTGTTACGCCTCATCCTCCTCAGACTCCTGTGGCT
CCACACCCTTGCGTGGTCCAGGCTCCCCAGTTAAGGTCATCCACCAGCCTCCACTGCCCCCGCCCCCGCC
CCCATACAACCACCCTCATCAGTTCTGCCCCCCAGGCTCCATGCTGCTCCGGCGCCGTTACTCCAGCGGC
TCCAGGAGCCTGGTGTAG

Translation (1195 aa):
MESLLENPVRAVLYLKELTAIVQNQQSLIHTQRQRIDELERRLDELSAENRSLWEHQQLLQAQPPPGLVP
PPPSAPLPAPAVTAPAAAAAQEPLQDHGQLIPASPEPPLQHHGQLLAQPQPAPSSRVQTPQSPHQHPVAP
GAIADKEKERPSSCCAAAGALLQHASPAALGKGVLSRRPENETVLHQFCCPAADTEQKPACSDLASQSDG
SCAQAGGGMEDSVVAAVAAGRPSAHAPKAQAPELQQEEERPGAVGSPRAGPLRAASPGRQQPALATALCS
HTPAASEYELSLDLKNKQIEMLEHKYGGHLVSRRAACTIQTAFRQYQLSKNFEKIRNSLLESRLPRRISL
RKVRAPTAESLVAEKALLEGCGLLGLPLGRSPSLPPTFAGSLTELEDSFTEQVQSLAKSIDDALSTWSLK
TMCSLQESGAYQLHQALHPSAGQPGLETEAAAREPESGPGSGDEAGGLPQGHSGTLMMAFRDVTVQIANQ
NISVSSSTALSVANCLGAQTAQATAEPAAAQAEQEDTADQEVSEVPASEQMDPPSEDSEAAESRAQSAQE
PAVAQAVVEEAVATEAEEEEEGAKQAGKGAEAEGGDNSEQLSSSSASTKSAKSSSEASAAASKEALQAVI
LSLPRYHCENPASCRSPTLSTDTLRKRLYRIGLNLFNINPDKGIQFLISRGFIPDTPIGVAHFLLQRKGL
SRQMIGEFLGNSKKQFNRDVLDCVVDEMDFSNMELDEALRKFQAHIRVQGEAQKVERLIEAFSQRYCMCN
PEVVQQFHNPDTIFILAFAIILLNTDMYSPNIKPDRKMMLEDFIRNLRGVDDGADIPRELVVGIYERIQQ
KELKSNEDHVTYVTKVEKSIVGMKTVLSMPHRRLVCCSRLFEVTDVNKLQKQAAHQREVFLFNDLLVILK
LCPKKKSSFTYTFCKAVGLLGMRFHLFENEYYSHGITLATPLSGSEKKQVLHFCALGSDEMQKFVEDLKE
SIAEVTELEQIRIEWELEKQQGTKTLSVRSAGAQGDPQSKQGSPTAKREAMAGEKAAESSGEVSIHNRLQ
TSQHSPKLGVERGAPAPSPPTSPPPLPPDPQPSPLREQPPPLPLPPPTPPGTLVQCQQIVKVIVLDKPCL
ARMEPLLSQALSCYASSSSDSCGSTPLRGPGSPVKVIHQPPLPPPPPPYNHPHQFCPPGSMLLRRRYSSG
SRSLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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