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Report for CCDS18123.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18123.1 Public Mus musculus 4 Rnf38 23 108 98 CCDS HistoryNCBI Gene:73469Re-query CCDS DB by CCDS ID:18123.1Re-query CCDS DB by GeneID:73469See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18123.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045793.14 ENSMUSP00000038477.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045793.14Link to Ensembl Protein Viewer:ENSMUSP00000038477.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000045793Re-query CCDS DB by Protein ID:ENSMUSP00000038477
Original member Current member EBI ENSMUST00000102934.8 ENSMUSP00000099998.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102934.8Link to Ensembl Protein Viewer:ENSMUSP00000099998.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000102934Re-query CCDS DB by Protein ID:ENSMUSP00000099998
Original member Current member EBI ENSMUST00000107836.7 ENSMUSP00000103467.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107836.7Link to Ensembl Protein Viewer:ENSMUSP00000103467.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107836Re-query CCDS DB by Protein ID:ENSMUSP00000103467
Original member NCBI NM_001038993.4 NP_001034082.1 Updated not alive Link to Nucleotide Sequence:NM_001038993.4Link to Protein Sequence:NP_001034082.1Re-query CCDS DB by Nucleotide ID:NM_001038993Re-query CCDS DB by Protein ID:NP_001034082
Current member NCBI NM_001038993.5 NP_001034082.1 Accepted alive Link to Nucleotide Sequence:NM_001038993.5Link to Protein Sequence:NP_001034082.1Re-query CCDS DB by Nucleotide ID:NM_001038993Re-query CCDS DB by Protein ID:NP_001034082Link to BLAST:NP_001034082.1
Original member NCBI NM_001355181.1 NP_001342110.1 Updated not alive Link to Nucleotide Sequence:NM_001355181.1Link to Protein Sequence:NP_001342110.1Re-query CCDS DB by Nucleotide ID:NM_001355181Re-query CCDS DB by Protein ID:NP_001342110
Current member NCBI NM_001355181.2 NP_001342110.1 Accepted alive Link to Nucleotide Sequence:NM_001355181.2Link to Protein Sequence:NP_001342110.1Re-query CCDS DB by Nucleotide ID:NM_001355181Re-query CCDS DB by Protein ID:NP_001342110Link to BLAST:NP_001342110.1

Chromosomal Locations for CCDS 18123.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 44129594 44129656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44131544 44131643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44133640 44133761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44134890 44134974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44137555 44137661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44138670 44138831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44142295 44142465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44143448 44143615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44149025 44149238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 44152360 44152466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGCGACCATGGGAGATGACATCAAATAGGCAGCCCCCTTCAGTTCGACCAAATCAACATCACTTCTCAG
GGGAACGCTGTAACACACCTGCACGCAACAGAAGAAGTCCTCCTGTTAGGCGTCAGCGAGGAAGAAGGGA
ACGTCTGTCTCGACATAATTCCATTAGTCAAGATGAAAACTATCACCATCTCCCTTATGCACAGCAGCAA
GCAATAGAGGAACCTCGAGCCTTCCACCCTCCGAATGTATCTCCCCGTCTGTTACATCCAGCTGCCCATC
CCCCCCAGCAGAATGCAGTCATGGTTGACATACATGATCAGCTCCATCAAGGAACAGTTCCTGTCTCCTA
CACGGTAACTACGGTGGCACCCCATGGGCTTCCACTCTGCACTGGCCAGCACATCCCTGCTTGCAGTACA
CAGCAGGTCCCAGGATGCTCGGTGGTTTTCAGTGGACAACACCTCCCCGTCTGTAGTGTGCCTCCTCCAA
TGCTTCAGGCATGTTCAGTTCAGCACTTACCAGTACCATATGCTGCGTTCCCGCCCCTCATTTCTAGCGA
TCCGTTTCTTATACATCCTCCTCATCTTTCTCCCCATCATCCTCCCCACTTGCCACCACCAGGCCAATTT
GTCCCTTTCCAAACACAGCAGTCACGATCGCCTCTGCAGAGGATAGAAAATGAAGTGGAGCTCTTAGGAG
AACATCTTCAAGTAGGCAGTTTTACTTATCCCCCTTCAGCCCATCCCCCAACATTACCTCCGTCAGCTCC
TTTGCAGTTCCTGACACATGACCCTTTGCATCAGGAGGTGTCCTTTGGAGTACCTTACCCACCATTTATG
CCTCGGAGACTCACAGGACGTAGTAGATACCGATCCCAGCAGCCAATGCCCCCTCCTCCTTACCATCCCA
GCTTACTACCATACGTGCTATCAATGCTTCCAGTACCACCTGCAGTGGGCCCAACCTTCAGCTTTGAATT
AGATGTAGAAGACGGAGAAGTTGAAAATTATGAGGCCCTGTTAAACTTGGCGGAGAGACTGGGAGAGGCG
AAACCTCGGGGACTGACTAAAGCAGATATTGAACAGCTTCCTTCGTACAGGTTCAATCCTAGCAACCACC
AGTCAGAGCAGACTTTGTGTGTAGTATGCATGTGTGATTTTGAGTCAAGGCAGCTTCTTAGAGTCTTACC
TTGTAACCACGAGTTCCATGCCAAGTGTGTTGATAAATGGCTTAAGGGAAACCGTACCTGCCCAATTTGC
CGAGCTGATGCTTCAGAAGTGCATCGCGATTCAGAGTGA

Translation (432 aa):
MRPWEMTSNRQPPSVRPNQHHFSGERCNTPARNRRSPPVRRQRGRRERLSRHNSISQDENYHHLPYAQQQ
AIEEPRAFHPPNVSPRLLHPAAHPPQQNAVMVDIHDQLHQGTVPVSYTVTTVAPHGLPLCTGQHIPACST
QQVPGCSVVFSGQHLPVCSVPPPMLQACSVQHLPVPYAAFPPLISSDPFLIHPPHLSPHHPPHLPPPGQF
VPFQTQQSRSPLQRIENEVELLGEHLQVGSFTYPPSAHPPTLPPSAPLQFLTHDPLHQEVSFGVPYPPFM
PRRLTGRSRYRSQQPMPPPPYHPSLLPYVLSMLPVPPAVGPTFSFELDVEDGEVENYEALLNLAERLGEA
KPRGLTKADIEQLPSYRFNPSNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKGNRTCPIC
RADASEVHRDSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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