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Report for CCDS16909.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16909.1 Public Mus musculus 2 Pofut1 23 108 98 CCDS HistoryNCBI Gene:140484Re-query CCDS DB by CCDS ID:16909.1Re-query CCDS DB by GeneID:140484See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16909.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049863.11 ENSMUSP00000053122.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049863.11Link to Ensembl Protein Viewer:ENSMUSP00000053122.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000049863Re-query CCDS DB by Protein ID:ENSMUSP00000053122
Original member NCBI NM_080463.3 NP_536711.3 Updated not alive Link to Nucleotide Sequence:NM_080463.3Link to Protein Sequence:NP_536711.3Re-query CCDS DB by Nucleotide ID:NM_080463Re-query CCDS DB by Protein ID:NP_536711
Current member NCBI NM_080463.4 NP_536711.3 Accepted alive Link to Nucleotide Sequence:NM_080463.4Link to Protein Sequence:NP_536711.3Re-query CCDS DB by Nucleotide ID:NM_080463Re-query CCDS DB by Protein ID:NP_536711Link to BLAST:NP_536711.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_536711.3 393 Q91ZW2 393 100% 0 0

Chromosomal Locations for CCDS 16909.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 153241587 153241725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153243638 153243759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153248449 153248631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153249681 153249793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153259600 153259792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153261198 153261440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 153265695 153265883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1182 nt):
ATGGGCGCCGCCGCGTGGGCACCGCCACACCTGCTGCTGCGGGCGTCTTTCCTGCTTCTGCTGCTGTTGC
TGCCGCTCCGCGGGCGGTCAGCGGGCTCCTGGGACCTGGCCGGTTACCTGCTCTACTGTCCCTGCATGGG
GCGCTTTGGGAACCAGGCTGATCACTTCTTGGGCTCCCTGGCATTTGCGAAGCTGCTGAACCGCACCTTG
GCTGTACCTCCATGGATTGAATACCAACATCACAAGCCTCCTTTCACCAACCTCCATGTGTCCTACCAAA
AGTACTTCAAACTGGAGCCTCTCCAAGCCTACCATCGGGTTGTCAGCCTGGAGGACTTCATGGAAAATCT
GGCACCCTCCCACTGGCCCCCTGAGAAGCGAGTGGCATACTGCTTTGAGGTGGCAGCCCAGCGAAGTCCT
GATAAGAAGACATGTCCCATGAAGGAAGGAAATCCTTTTGGGCCATTCTGGGACCAGTTTCATGTGAGTT
TCAATAAGTCAGAACTGTTCACAGGCATTTCCTTCAGCGCCTCCTACAAAGAACAATGGACCCAGAGATT
TCCTGCAAAAGAGCATCCTGTGCTCGCACTGCCTGGGGCCCCAGCACAGTTCCCTGTCCTGGAGGAACAC
AGGGAGCTCCAGAAGTACATGGTGTGGTCAGATGAGATGGTGAGGACGGGAGAGGCCCTGATCAGTGCCC
ACCTCGTCCGGCCCTATGTGGGCATTCATCTGCGCATTGGCTCCGACTGGAAGAATGCCTGTGCCATGCT
GAAGGATGGAACTGCAGGGTCACACTTCATGGCTTCCCCTCAGTGTGTGGGCTATAGCCGCAGCACAGCG
ACCCCTCTCACCATGACCATGTGCCTCCCTGACCTGAAGGAAATCCAGCGGGCTGTGACGCTTTGGGTGA
GAGCACTGAATGCCAGATCGGTCTACATCGCCACAGACTCTGAGAGCTACGTGTCAGAGATCCAGCAGCT
CTTCAAAGACAAGGTGAGGGTGGTGAGCCTGAAACCCGAGGTGGCCCAGATCGACCTGTACATCCTCGGC
CAGGCTGACCACTTCATTGGAAACTGTGTCTCCTCGTTCACTGCCTTCGTGAAGCGGGAGCGGGACCTCC
ATGGGAGGCAGTCGTCCTTCTTTGGCATGGACAGACCCTCCCAGCTTCGGGATGAATTTTGA

Translation (393 aa):
MGAAAWAPPHLLLRASFLLLLLLLPLRGRSAGSWDLAGYLLYCPCMGRFGNQADHFLGSLAFAKLLNRTL
AVPPWIEYQHHKPPFTNLHVSYQKYFKLEPLQAYHRVVSLEDFMENLAPSHWPPEKRVAYCFEVAAQRSP
DKKTCPMKEGNPFGPFWDQFHVSFNKSELFTGISFSASYKEQWTQRFPAKEHPVLALPGAPAQFPVLEEH
RELQKYMVWSDEMVRTGEALISAHLVRPYVGIHLRIGSDWKNACAMLKDGTAGSHFMASPQCVGYSRSTA
TPLTMTMCLPDLKEIQRAVTLWVRALNARSVYIATDSESYVSEIQQLFKDKVRVVSLKPEVAQIDLYILG
QADHFIGNCVSSFTAFVKRERDLHGRQSSFFGMDRPSQLRDEF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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