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Report for CCDS38092.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38092.1 Public Mus musculus 2 Rapgef1 23 108 98 CCDS HistoryNCBI Gene:107746Re-query CCDS DB by CCDS ID:38092.1Re-query CCDS DB by GeneID:107746See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38092.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091146.11 ENSMUSP00000088680.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091146.11Link to Ensembl Protein Viewer:ENSMUSP00000088680.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000091146Re-query CCDS DB by Protein ID:ENSMUSP00000088680
Original member Current member NCBI NM_001039086.1 NP_001034175.1 Accepted alive Link to Nucleotide Sequence:NM_001039086.1Link to Protein Sequence:NP_001034175.1Re-query CCDS DB by Nucleotide ID:NM_001039086Re-query CCDS DB by Protein ID:NP_001034175Link to BLAST:NP_001034175.1

Chromosomal Locations for CCDS 38092.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 29620003 29620063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29679133 29679269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29686105 29686283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29689107 29689263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29698997 29699085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29699686 29699838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29700186 29700306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29700668 29700851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29702193 29702678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29707198 29707400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29710153 29710308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29719593 29719850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29720643 29720738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29722224 29722309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29724773 29724884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29726206 29726281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29730528 29730612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29732827 29732919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29733577 29733762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29734200 29734284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29734425 29734519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29735802 29735880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29735984 29736085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29736572 29736669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29737327 29737455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29737920 29738070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3657 nt):
ATGAGCAGCGGCCTCGGCCTCCGGCGCAGCCCGGAAATGTCCGGCAAGATCGAGAAAGCAGACTCTCAGC
GTTCTCATCTCTCCTCCTTCACCATGAAGCTGATGGACAAATTCCACTCTCCCAAAATCAAGAGAACACC
ATCCAAGAAGGGAAAGCCAGCCGAGGTGTCGAAGATTCCTGAGAAGCCTGTGAGCAAAAACCTGTGCTGG
CTGGAGGAGAAAGAGAAGGAGGTTGTCAGTGCCTTGCGCTACTTTAAGACCATTGTGGACAAAATGGCCA
TTGATAAGAAGGTTCTGGAGATGCTCCCGGGGTCAGCCAGCAAGGTGCTGGAGGCCATCTTACCCCTGGT
GCAGACTGACCCTCGGATCCAGCACAGCTCAGCCCTCTCCTCCTGTTATAGCCGAGTATACCAGAGCCTC
GCCAACCTTATCCGATGGTCTGACCAGGTGATGCTAGAGGGCGTGAACTCAGAAGATAAGGAGATGGTGA
CAACTGTGAAGGGCGTTATCAAAGCTGTCCTGGACGGAGTGAAGGAGCTAGTGAGGCTAACCATTGAGAA
GCAGGGGCGGCCATCGCCAACAAGCCCAGTGAAGCCCAGTTCCCCAGCCAGCAAGCCTGATGGCCAGCCT
GAGCTCCCTCTGACAGACCGAGAAATGGAGATTCTGAACAAGACGACAAGTGTGTCACCATCTGCTGAAC
TGCTCCCAGACTCCACCAGTGAAGAGGTCGCACCCCCCAAGCCCCCTTTACCTGGCATCCGGGTGGTTGA
TAACAGTCCACCAGCATTACCACCCAAGAAAAGGCAGTCTGCTCCATCCCCCACTCGGGTGGCTGTGGTA
GCCCCAATGAGTCGGGCTACCAGTGGCTCCAGTTTGCCTGTTGGAATCAATAGGCAGGACTTTGATGTTG
AATGTTACACCCAGAGGCGCCTGTCAGGAGGCAGCCGCTCCTGCGGTGGTGAGTCTCCTCGCCTGTCCCC
CTGCAGCAGCACAGGCAAGCTCAGCCGCTCAGACGAGCAGCTGTCCTCCCTGGACAGGGATAGTGGGCAG
TGCTCACGGAACACAAGCTGTGAAACACTAGATCACTACGACCCCGACTATGAATTCCTCCAGCAAGATC
TCTCCAATGCAGACCAGATCCCTCCACAGGCAGCCTGTAACCTCAGCCCTCTGCCGGAGTCCCTGGGGGA
ATCTGGGCCTCCATTTCTTGGCCACCCTTTCCAGCTGCCTTTGGGCAGCTGTCTGCAGCAGGAGGGACAG
CAGACAGACACTCCACCTGCCCTTCCGGAGAAGAAGCGTAGGAGCGCAGTCTCCCAGACCACGGACAGCT
CTGGCTGCAGGGTGTCCTATGAGCGACACCCCTCACAGTATGACAACATCTCAGAGGGTGACCTGCAGAA
CCCAGTCCCAGTCCAGCCTGTGCCCTACCCACCCTTTGCTGCTGTCCTGCCCTTTCAGCAGGGAGCTTCC
TCTGCCTCTGCTGAGTTTGTGGGTGATTTCAGTGTTCCTGAGTTGGCGGGTGACACAGAGAAGCCACCTC
CTCTACCAGAGAAGAAGAACAAGCACATGCTGGCCTACATGCAACTGCTGGAGGACTACTCAGAGCCACA
GCCCTCCATGTTCTACCAGACACCGCAGAGTGAGCACATCTACCAGCAGAAGAACAAGATGCTCATGGAG
GTGTACGGCTTCAGCGAGTCCTTCTGCGGTAGTGATTCCACGCAGGAGCTGGCCCCTCCACCCGCTCTGC
CCCCCAAGCAACGGCAGCTGCAGGCCTCCTATGCTGCTTCTTCCTTCTCTGTCTCCTACTGTGTCCAGCA
AACTAAAGTGGCCTTCACCCCCGAGGACGGCAGTGCCGCTCAGGGCCTCAGTGTATCCGTGTCTAACTCC
TTTCTCAACCGGCACGGCAGCTTGCCTGTGCCCTCGTACAAATCTGTGTTTAGGTCTTACTCCCAGGACT
TCATGCCTCACCACCAAGCCTCCGTCCAACCTTTCCTTCCGCCTACCTCCTCTTCCTCTCCACATTTCCC
ACCTGTCCACACGTCCCAGAGCTCGGACTTAGCGGTGCCCACCGTAAGCAGTCCGCCTCCCAGCACCGTG
GACGGGCCTCTCTCGTCTTCTCAGGACAGCAGCTTTCATGGGAACCCTGTCCGCCTTCCTTCCGAAACCT
CTTTCACTGACTCGAGTGAAAAGGCCAGCAGTGAGGAAGCTGGTGGGGATGAGTATGTCAGTCTGTACTC
CTCTGGCCAGACCAGCGAGGAGCTGGCTCCCTGTCGAGGAGAACCACCATCTGGGAAGGACGGACATCCC
AGAGATCCTTCGGTCAGCAGTGCATCTGGGAAGGACAGCAGAGAAAATGGGGAAAGGTCCCCAAAGTCAC
TGGATGGTCTGGAGTCAGCGCAGTCAGAAGAGGAAGTGGATGAACTGTCCCTCATTGACCACAATGAAAT
TATGGCCAGGCTGACACTCAAGCAAGAGGGTGATGATGGGCCAGATGTTCGTGGTGGTTCAGGAGACATC
TTACTGGTCCATGCTACTGAGACAGACAGAAAAGACCTGGTGCTGTACTGTGAAGCCTTCCTGACCACCT
ACAGGACCTTCATCAGCCCGGAGGAGCTCATCAAGAAGCTGCAGTACCGGTACGAGAAGTTCTCTCCCTT
TGCTGACACGTTCAAGAAGCGAGTGAGCAAGAACACATTCTTTGTGCTGGTTCGAGTGGTGGATGAGCTC
TGCCTGGTGGAGCTGACAGAGGAGATCCTGAAGCTGCTGATGGAGCTGGTCTTCCGCCTAGTGTGCAGCG
GAGAGCTCAGCCTGGCCAGAGTCCTCCGGAAGAACATTCTGGACAAGGTGGACCAGAAGAAGCTGCTCAG
GTGTGCCCATTCCGACCAGCCTCTGGCAGCCAGGGGTGTTGCAGCCAGGCCAGGAACCTTGCATGATTTC
CACAGCCACGAGATAGCTGAGCAGCTGACACTGCTGGATGCCGAGCTTTTCTACAAGATAGAGATTCCTG
AAGTTTTGCTTTGGGCCAAAGAGCAGAATGAGGAGAAGAGTCCCAATCTGACCCAGTTCACAGAGCACTT
CAACAACATGTCCTACTGGGTGCGGTCCATCATCATGCTGCAGGAGAAGGCCCAGGACCGGGAGAGGCTG
CTCCTCAAGTTCATCAAGATCATGAAGCACCTGCGCAAGCTCAACAACTTCAACTCCTACCTGGCCATCC
TCTCAGCACTAGACTCGGCCCCCATCCGCAGACTGGAGTGGCAGCGGCAGACCTCAGAGGGCCTGGCTGA
GTACTGCACATTGATTGACAGCTCATCCTCCTTCCGAGCCTACCGGGCTGCTCTCTCAGAGGTGGAGCCC
CCATGTATCCCATACCTAGGTCTGATTCTGCAAGACCTGACCTTCGTTCACCTGGGAAACCCAGATTATA
TTGACGGGAAAGTAAACTTCTCCAAGCGGTGGCAACAGTTCAACATATTGGACAGCATGCGGTGCTTCCA
GCAGGCGCACTATGAAATCCGGAGAAACGACGACATCATAAATTTCTTCAATGACTTCAGTGACCACCTG
GCCGAGGAAGCCCTGTGGGAACTCTCTCTGAAGATCAAGCCTAGGAACATAACAAGGCGGAAAACAGACC
GCGAAGAGAAGACCTAG

Translation (1218 aa):
MSSGLGLRRSPEMSGKIEKADSQRSHLSSFTMKLMDKFHSPKIKRTPSKKGKPAEVSKIPEKPVSKNLCW
LEEKEKEVVSALRYFKTIVDKMAIDKKVLEMLPGSASKVLEAILPLVQTDPRIQHSSALSSCYSRVYQSL
ANLIRWSDQVMLEGVNSEDKEMVTTVKGVIKAVLDGVKELVRLTIEKQGRPSPTSPVKPSSPASKPDGQP
ELPLTDREMEILNKTTSVSPSAELLPDSTSEEVAPPKPPLPGIRVVDNSPPALPPKKRQSAPSPTRVAVV
APMSRATSGSSLPVGINRQDFDVECYTQRRLSGGSRSCGGESPRLSPCSSTGKLSRSDEQLSSLDRDSGQ
CSRNTSCETLDHYDPDYEFLQQDLSNADQIPPQAACNLSPLPESLGESGPPFLGHPFQLPLGSCLQQEGQ
QTDTPPALPEKKRRSAVSQTTDSSGCRVSYERHPSQYDNISEGDLQNPVPVQPVPYPPFAAVLPFQQGAS
SASAEFVGDFSVPELAGDTEKPPPLPEKKNKHMLAYMQLLEDYSEPQPSMFYQTPQSEHIYQQKNKMLME
VYGFSESFCGSDSTQELAPPPALPPKQRQLQASYAASSFSVSYCVQQTKVAFTPEDGSAAQGLSVSVSNS
FLNRHGSLPVPSYKSVFRSYSQDFMPHHQASVQPFLPPTSSSSPHFPPVHTSQSSDLAVPTVSSPPPSTV
DGPLSSSQDSSFHGNPVRLPSETSFTDSSEKASSEEAGGDEYVSLYSSGQTSEELAPCRGEPPSGKDGHP
RDPSVSSASGKDSRENGERSPKSLDGLESAQSEEEVDELSLIDHNEIMARLTLKQEGDDGPDVRGGSGDI
LLVHATETDRKDLVLYCEAFLTTYRTFISPEELIKKLQYRYEKFSPFADTFKKRVSKNTFFVLVRVVDEL
CLVELTEEILKLLMELVFRLVCSGELSLARVLRKNILDKVDQKKLLRCAHSDQPLAARGVAARPGTLHDF
HSHEIAEQLTLLDAELFYKIEIPEVLLWAKEQNEEKSPNLTQFTEHFNNMSYWVRSIIMLQEKAQDRERL
LLKFIKIMKHLRKLNNFNSYLAILSALDSAPIRRLEWQRQTSEGLAEYCTLIDSSSSFRAYRAALSEVEP
PCIPYLGLILQDLTFVHLGNPDYIDGKVNFSKRWQQFNILDSMRCFQQAHYEIRRNDDIINFFNDFSDHL
AEEALWELSLKIKPRNITRRKTDREEKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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