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Report for CCDS36878.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36878.1 Public Mus musculus 14 Ldb3 23 108 98 CCDS HistoryNCBI Gene:24131Re-query CCDS DB by CCDS ID:36878.1Re-query CCDS DB by GeneID:24131See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36878.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064098.13 ENSMUSP00000066784.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064098.13Link to Ensembl Protein Viewer:ENSMUSP00000066784.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000064098Re-query CCDS DB by Protein ID:ENSMUSP00000066784
Original member Current member NCBI NM_001039072.2 NP_001034161.1 Accepted alive Link to Nucleotide Sequence:NM_001039072.2Link to Protein Sequence:NP_001034161.1Re-query CCDS DB by Nucleotide ID:NM_001039072Re-query CCDS DB by Protein ID:NP_001034161Link to BLAST:NP_001034161.1

Chromosomal Locations for CCDS 36878.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 34529460 34529549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34536565 34536680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34541868 34541988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34542427 34542607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34543973 34544417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34552177 34552322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34555343 34555528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34566857 34566893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34567398 34567567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34571718 34571921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34572990 34573012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34578595 34578670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34579176 34579327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 34588377 34588469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2040 nt):
ATGTCTTACAGTGTGACTCTGACTGGGCCTGGGCCCTGGGGCTTCCGTCTGCAGGGAGGCAAGGACTTCA
ACATGCCCCTCACTATCTCCCGGATCACTCCAGGCAGCAAGGCAGCCCAGTCCCAGCTCAGCCAAGGAGA
CCTGGTGGTGGCCATTGATGGCGTCAACACAGACACCATGACCCACCTGGAGGCCCAGAACAAGATCAAG
TCGGCCAGCTACAACCTGAGCCTCACTCTACAGAAGTCCAAGCGGCCTATTCCCATCTCCACGACAGCGC
CTCCCATCCAGTCCCCGCTGCCAGTGATCCCCCACCAGAAGGTGGTAGCCAATTCTCCAGCCAATGCTGA
CTACCAGGAACGCTTCAACCCCAGCGTCCTGAAGGACTCAGCCCTGTCCACCCACAAGCCCATTGAAGTG
AAGGGCTTGGGAGGCAAGGCCACTATCATCCACGCTCAGTACAACACCCCGATCAGCATGTACTCACAGG
ATGCTATCATGGACGCCATCGCGGGGCAGGCCCAGGCCCAGGGCAGTGACTTCAGTGGGAGCCTCCCTGT
GAAAGACTTGGCGGTGGACAGCGCCTCTCCTGTGTACCAGGCTGTGATCAAAACCCAAAGCAAGCCGGAA
GATGAGGCTGATGAGTGGGCCCGCCGGTCCTCCAACCTGCAGTCTCGCTCCTTCCGCATCCTGGCCCAGA
TGACCGGGACAGAATACATGCAAGACCCTGATGAAGAGGCTCTGCGAAGGTCAAGCACCCCTATTGAGCA
TGCTCCAGTGTGCACCAGCCAGGCCACTTCCCCGCTGCTGCCTGCTTCTGCCCAGTCGCCCGCTGCTGCC
TCTCCCATTGCGGCCTCGCCAACCCTGGCCACAGCTGCTGCCACCCATGCTGCTGCCGCCTCTGCTGCAG
GCCCTGCCGCAAGTCCCGTGGAGAATCCGAGGCCACAGGCCTCTGCTTACAGTCCTGCAGCCGCCGCTTC
TCCAGCACCCTCTGCCCATACCAGCTACAGCGAGGGTCCAGCTGCCCCTGCACCCAAGCCTCGGGTCGTA
ACCACTGCCAGCATCCGGCCTTCTGTCTACCAGCCAGTGCCTGCATCTTCCTACAGCCCATCTCCAGGAG
CCAATTACAGTCCAACTCCCTATACCCCTTCGCCAGCTCCTGCTTATACCCCCTCTCCTGCTCCCACCTA
TACCCCCTCACCTGCACCTACATACTCCCCTTCCCCTGCACCAGCTTATACCCCCTCACCTGCCCCAAAC
TATACCCCTACACCATCAGCTGCCTACAGTGGGGGCCCTTCAGAATCTGCCAGCCGTCCACCCTGGGTGA
CCGATGACAGCTTCTCTCAGAAGTTTGCTCCTGGAAAGAGCACTACCACTGTCAGCAAGCAGACCCTGCC
CCGGGGGGCTCCAGCCTACAACCCAACAGGTCCACAAGTGACACCTCTTGCCAGGGGCACCTTCCAGAGA
GCTGAGCGCTTCCCAGCTAGCAGCCGGACTCCCCTCTGTGGGCACTGTAACAATGTCATCAGGGGCCCTT
TTCTGGTGGCCATGGGCCGCTCTTGGCACCCAGAAGAGTTCAATTGTGCCTACTGCAAGACCTCCCTAGC
AGATGTGTGCTTTGTGGAGGAGCAGAACAACGTTTACTGCGAGCGGTGTTACGAGCAGTTCTTTGCCCCG
ATCTGTGCCAAATGTAACACCAAAATCATGGGGGAAGTGATGCACGCTCTGCGACAGACATGGCACACCA
CCTGCTTTGTCTGTGCAGCCTGCAAGAAGCCCTTTGGGAACAGCCTCTTCCACATGGAGGATGGAGAGCC
ATACTGTGAGAAAGACTACATCAACCTGTTCAGCACCAAGTGCCATGGATGCGATTTCCCTGTGGAAGCT
GGTGACAAGTTTATCGAGGCCCTGGGGCACACCTGGCATGACACCTGCTTCATTTGTGCGGTCTGCCACG
TGAATCTGGAGGGTCAGCCATTCTACTCTAAGAAAGACAAACCACTGTGCAAGAAGCACGCACATGCCAT
CAACGTGTAG

Translation (679 aa):
MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIK
SASYNLSLTLQKSKRPIPISTTAPPIQSPLPVIPHQKVVANSPANADYQERFNPSVLKDSALSTHKPIEV
KGLGGKATIIHAQYNTPISMYSQDAIMDAIAGQAQAQGSDFSGSLPVKDLAVDSASPVYQAVIKTQSKPE
DEADEWARRSSNLQSRSFRILAQMTGTEYMQDPDEEALRRSSTPIEHAPVCTSQATSPLLPASAQSPAAA
SPIAASPTLATAAATHAAAASAAGPAASPVENPRPQASAYSPAAAASPAPSAHTSYSEGPAAPAPKPRVV
TTASIRPSVYQPVPASSYSPSPGANYSPTPYTPSPAPAYTPSPAPTYTPSPAPTYSPSPAPAYTPSPAPN
YTPTPSAAYSGGPSESASRPPWVTDDSFSQKFAPGKSTTTVSKQTLPRGAPAYNPTGPQVTPLARGTFQR
AERFPASSRTPLCGHCNNVIRGPFLVAMGRSWHPEEFNCAYCKTSLADVCFVEEQNNVYCERCYEQFFAP
ICAKCNTKIMGEVMHALRQTWHTTCFVCAACKKPFGNSLFHMEDGEPYCEKDYINLFSTKCHGCDFPVEA
GDKFIEALGHTWHDTCFICAVCHVNLEGQPFYSKKDKPLCKKHAHAINV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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