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Report for CCDS47312.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47312.2 Public Homo sapiens 5 SMIM3 24 110 108 CCDS HistoryNCBI Gene:85027Re-query CCDS DB by CCDS ID:47312.2See the combined annotation on chromosome 5 in Sequence Viewer

Public Note for CCDS 47312.1
The coding region has been updated to represent an alternate CDS that is more supported by available conservation data, cross-species protein homology, and publications.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 47312.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000526627.2 ENSP00000436897.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000526627.2Link to Ensembl Protein Viewer:ENSP00000436897.1Re-query CCDS DB by Nucleotide ID:ENST00000526627Re-query CCDS DB by Protein ID:ENSP00000436897
Original member Current member EBI ENST00000648745.1 ENSP00000496958.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000648745.1Link to Ensembl Protein Viewer:ENSP00000496958.1Re-query CCDS DB by Nucleotide ID:ENST00000648745Re-query CCDS DB by Protein ID:ENSP00000496958
Original member Current member NCBI NM_032947.5 NP_116565.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032947.5Link to Protein Sequence:NP_116565.3Re-query CCDS DB by Nucleotide ID:NM_032947Re-query CCDS DB by Protein ID:NP_116565Link to BLAST:NP_116565.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116565.3 60 Q9BZL3 60 100% 0 0

Chromosomal Locations for CCDS 47312.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 150795441 150795623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (183 nt):
ATGGATGCAGTCAGCCAAGTCCCCATGGAAGTCGTGCTTCCCAAGCACATCCTGGATATCTGGGTTATTG
TCCTCATCATCCTGGCCACCATTGTCATCATGACCTCGTTGTTGCTGTGCCCAGCCACTGCAGTAATCAT
CTATCGCATGCGGACTCATCCGATCCTTAGTGGGGCTGTTTGA

Translation (60 aa):
MDAVSQVPMEVVLPKHILDIWVIVLIILATIVIMTSLLLCPATAVIIYRMRTHPILSGAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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