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Report for CCDS28166.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28166.1 Public Mus musculus 16 Pla1a 23 108 98 CCDS HistoryNCBI Gene:85031Re-query CCDS DB by CCDS ID:28166.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28166.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002926.7 ENSMUSP00000002926.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002926.7Link to Ensembl Protein Viewer:ENSMUSP00000002926.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000002926Re-query CCDS DB by Protein ID:ENSMUSP00000002926
Original member Current member NCBI NM_134102.4 NP_598863.3 Accepted alive Link to Nucleotide Sequence:NM_134102.4Link to Protein Sequence:NP_598863.3Re-query CCDS DB by Nucleotide ID:NM_134102Re-query CCDS DB by Protein ID:NP_598863Link to BLAST:NP_598863.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598863.3 456 Q8VI78 456 100% 0 0

Chromosomal Locations for CCDS 28166.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 38396451 38396535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38397339 38397503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38400876 38400984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38405537 38405626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38407592 38407759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38409595 38409684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38412086 38412187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38414769 38414877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38415318 38415495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38417060 38417261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38432804 38432876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1371 nt):
ATGCGTCCTGGCCTCTGGGAGACATGCTTCTGGTTGTGGGGACCACTTTTATGGCTCAGCATTGGAAGTT
CAGGGAACGTACCCCCTACCACCCAACCCAAGTGCACGGACTTTCAGAGTGCCAACCTCCTCCGAGGCAC
CAACCTCAAGGTGCAGTTTCTCCTCTTTACCCCCTCGGACCCCAGCTGTGGGCAGCTAGTAGAAGAAGGC
AGTGACATCCGGAGCTCTGAGTTCAATGCCAGTCTGGGAACCAAAGTAATTATTCATGGATTCAGGGCGC
TCGGAACAAAGCCTTCTTGGATCGACAAGTTTATCAGCGCTGTCCTGCGGGCTGCGGATGCTAATGTAAT
CGCGGTGGACTGGGTTTATGGTTCTACGGGCGTGTACTACTCAGCAGTGGAGAATGTGGTCAAGCTGAGC
CTGGAGATCTCCCGTTTCCTCAGCAAACTTTTGGAGCTGGGCGTGTCAGAGTCCTCAATCCACATCATTG
GTGTCAGTCTGGGGGCTCATGTTGGAGGCATGGTGGGACATTTCTACAAAGGCCAGTTGGGACAGATCAC
AGGTCTGGATCCTGCTGGACCAGAGTACACCAGAGCCAGCCTGGAGGAACGCTTGGATGCTGGAGACGCC
CTGTTTGTAGAAGCCATCCACACAGACACGGACAATTTGGGTATCCGGATTCCTGTTGGACATGTGGACT
ACTTTGTCAATGGAGGCCAAGACCAGCCTGGATGCCCTGCCTTCTTTCACGCAGGTTACAATTACTTGAT
CTGTGATCACATGAGGGCAGTACACCTCTACATCAGTGCCCTGGAGAACACCTGCCCACTGATGGCCTTC
CCCTGTGCCAGCTACAAGGCCTTCCTCGCAGGAGACTGTCTGGATTGCTTTAACCCTTTCCTGCTCTCCT
GTCCGAGGATTGGACTGGTGGAACGAGGTGGTGTCATGATTGAGCCGCTCCCCAAGGAAGTGAAGGTTTA
TCTCCTGACTACATCCAGTGCCCCGTACTGTGTGCACCACAGCCTTGTGGAGTTTTATTTGAAGGAGAAG
AGAAAAAAGGATACCAGCATCGAGGTCACGTTTCTTAGCAACAACGTAACGTCCTCGGTCAAGATCACCA
TACCTAAACAGCAACTGGAAGGGAGAGGGGTCATGGCTCATCCTAACCCACAGTGCCAGATAAACCAAGT
GAAGCTCAAGTTCCAAGTTTCTAGCCGGGTTTGGAGAAAAGACAGAACTCCTGTTGTTGGGACTTTCTGT
ACTGCCCCTCTGCCGGTCAATGACAGCAAGAAGACGGTCTGCATACCTGAGCCAGTGCGTCTGCAAGCAG
GCGTGCCTGCTTTCCAGGACCTGAAAATAGCCTGCGTGTAG

Translation (456 aa):
MRPGLWETCFWLWGPLLWLSIGSSGNVPPTTQPKCTDFQSANLLRGTNLKVQFLLFTPSDPSCGQLVEEG
SDIRSSEFNASLGTKVIIHGFRALGTKPSWIDKFISAVLRAADANVIAVDWVYGSTGVYYSAVENVVKLS
LEISRFLSKLLELGVSESSIHIIGVSLGAHVGGMVGHFYKGQLGQITGLDPAGPEYTRASLEERLDAGDA
LFVEAIHTDTDNLGIRIPVGHVDYFVNGGQDQPGCPAFFHAGYNYLICDHMRAVHLYISALENTCPLMAF
PCASYKAFLAGDCLDCFNPFLLSCPRIGLVERGGVMIEPLPKEVKVYLLTTSSAPYCVHHSLVEFYLKEK
RKKDTSIEVTFLSNNVTSSVKITIPKQQLEGRGVMAHPNPQCQINQVKLKFQVSSRVWRKDRTPVVGTFC
TAPLPVNDSKKTVCIPEPVRLQAGVPAFQDLKIACV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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