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Report for CCDS1458.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1458.1 Public Homo sapiens 1 SLC45A3 24 110 108 CCDS HistoryNCBI Gene:85414Re-query CCDS DB by CCDS ID:1458.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1458.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367145.4 ENSP00000356113.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367145.4Link to Ensembl Protein Viewer:ENSP00000356113.3Re-query CCDS DB by Nucleotide ID:ENST00000367145Re-query CCDS DB by Protein ID:ENSP00000356113
Original member Current member NCBI NM_033102.3 NP_149093.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033102.3Link to Protein Sequence:NP_149093.1Re-query CCDS DB by Nucleotide ID:NM_033102Re-query CCDS DB by Protein ID:NP_149093Link to BLAST:NP_149093.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_149093.1 553 Q96JT2 553 100% 0 0

Chromosomal Locations for CCDS 1458.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 205659234 205659671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205661861 205662126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205662833 205663618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205664485 205664656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1662 nt):
ATGGTCCAGAGGCTGTGGGTGAGCCGCCTGCTGCGGCACCGGAAAGCCCAGCTCTTGCTGGTCAACCTGC
TAACCTTTGGCCTGGAGGTGTGTTTGGCCGCAGGCATCACCTATGTGCCGCCTCTGCTGCTGGAAGTGGG
GGTAGAGGAGAAGTTCATGACCATGGTGCTGGGCATTGGTCCAGTGCTGGGCCTGGTCTGTGTCCCGCTC
CTAGGCTCAGCCAGTGACCACTGGCGTGGACGCTATGGCCGCCGCCGGCCCTTCATCTGGGCACTGTCCT
TGGGCATCCTGCTGAGCCTCTTTCTCATCCCAAGGGCCGGCTGGCTAGCAGGGCTGCTGTGCCCGGATCC
CAGGCCCCTGGAGCTGGCACTGCTCATCCTGGGCGTGGGGCTGCTGGACTTCTGTGGCCAGGTGTGCTTC
ACTCCACTGGAGGCCCTGCTCTCTGACCTCTTCCGGGACCCGGACCACTGTCGCCAGGCCTACTCTGTCT
ATGCCTTCATGATCAGTCTTGGGGGCTGCCTGGGCTACCTCCTGCCTGCCATTGACTGGGACACCAGTGC
CCTGGCCCCCTACCTGGGCACCCAGGAGGAGTGCCTCTTTGGCCTGCTCACCCTCATCTTCCTCACCTGC
GTAGCAGCCACACTGCTGGTGGCTGAGGAGGCAGCGCTGGGCCCCACCGAGCCAGCAGAAGGGCTGTCGG
CCCCCTCCTTGTCGCCCCACTGCTGTCCATGCCGGGCCCGCTTGGCTTTCCGGAACCTGGGCGCCCTGCT
TCCCCGGCTGCACCAGCTGTGCTGCCGCATGCCCCGCACCCTGCGCCGGCTCTTCGTGGCTGAGCTGTGC
AGCTGGATGGCACTCATGACCTTCACGCTGTTTTACACGGATTTCGTGGGCGAGGGGCTGTACCAGGGCG
TGCCCAGAGCTGAGCCGGGCACCGAGGCCCGGAGACACTATGATGAAGGCGTTCGGATGGGCAGCCTGGG
GCTGTTCCTGCAGTGCGCCATCTCCCTGGTCTTCTCTCTGGTCATGGACCGGCTGGTGCAGCGATTCGGC
ACTCGAGCAGTCTATTTGGCCAGTGTGGCAGCTTTCCCTGTGGCTGCCGGTGCCACATGCCTGTCCCACA
GTGTGGCCGTGGTGACAGCTTCAGCCGCCCTCACCGGGTTCACCTTCTCAGCCCTGCAGATCCTGCCCTA
CACACTGGCCTCCCTCTACCACCGGGAGAAGCAGGTGTTCCTGCCCAAATACCGAGGGGACACTGGAGGT
GCTAGCAGTGAGGACAGCCTGATGACCAGCTTCCTGCCAGGCCCTAAGCCTGGAGCTCCCTTCCCTAATG
GACACGTGGGTGCTGGAGGCAGTGGCCTGCTCCCACCTCCACCCGCGCTCTGCGGGGCCTCTGCCTGTGA
TGTCTCCGTACGTGTGGTGGTGGGTGAGCCCACCGAGGCCAGGGTGGTTCCGGGCCGGGGCATCTGCCTG
GACCTCGCCATCCTGGATAGTGCCTTCCTGCTGTCCCAGGTGGCCCCATCCCTGTTTATGGGCTCCATTG
TCCAGCTCAGCCAGTCTGTCACTGCCTATATGGTGTCTGCCGCAGGCCTGGGTCTGGTCGCCATTTACTT
TGCTACACAGGTAGTATTTGACAAGAGCGACTTGGCCAAATACTCAGCGTAG

Translation (553 aa):
MVQRLWVSRLLRHRKAQLLLVNLLTFGLEVCLAAGITYVPPLLLEVGVEEKFMTMVLGIGPVLGLVCVPL
LGSASDHWRGRYGRRRPFIWALSLGILLSLFLIPRAGWLAGLLCPDPRPLELALLILGVGLLDFCGQVCF
TPLEALLSDLFRDPDHCRQAYSVYAFMISLGGCLGYLLPAIDWDTSALAPYLGTQEECLFGLLTLIFLTC
VAATLLVAEEAALGPTEPAEGLSAPSLSPHCCPCRARLAFRNLGALLPRLHQLCCRMPRTLRRLFVAELC
SWMALMTFTLFYTDFVGEGLYQGVPRAEPGTEARRHYDEGVRMGSLGLFLQCAISLVFSLVMDRLVQRFG
TRAVYLASVAAFPVAAGATCLSHSVAVVTASAALTGFTFSALQILPYTLASLYHREKQVFLPKYRGDTGG
ASSEDSLMTSFLPGPKPGAPFPNGHVGAGGSGLLPPPPALCGASACDVSVRVVVGEPTEARVVPGRGICL
DLAILDSAFLLSQVAPSLFMGSIVQLSQSVTAYMVSAAGLGLVAIYFATQVVFDKSDLAKYSA


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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