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Report for CCDS45778.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45778.2 Public Homo sapiens 17 UNK 24 110 108 CCDS HistoryNCBI Gene:85451Re-query CCDS DB by CCDS ID:45778.2See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 45778.1
The coding region has been updated to remove an unsupported 5' exon, resulting in a shorter N-terminus that is more supported by the available transcript and protein data.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 45778.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000589666.6 ENSP00000464893.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000589666.6Link to Ensembl Protein Viewer:ENSP00000464893.1Re-query CCDS DB by Nucleotide ID:ENST00000589666Re-query CCDS DB by Protein ID:ENSP00000464893
Original member Current member NCBI NM_001080419.3 NP_001073888.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080419.3Link to Protein Sequence:NP_001073888.2Re-query CCDS DB by Nucleotide ID:NM_001080419Re-query CCDS DB by Protein ID:NP_001073888Link to BLAST:NP_001073888.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073888.2 810 Q9C0B0 810 100% 0 0

Chromosomal Locations for CCDS 45778.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 75784881 75784984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75809760 75809969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75812112 75812288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75812455 75812585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75813078 75813213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75813761 75813878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75815169 75815253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75816770 75816912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75817326 75817526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75818103 75818168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75818642 75818816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75819684 75819785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75819920 75820108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75822477 75822658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75823265 75823522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75824262 75824417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2433 nt):
ATGTCGAAGGGCCCCGGGCCCGGCGGCTCCGCAGCTTCCTCGGCGCCCCCGGCCGCTACCGCTCAGGTGC
TGCAGGCACAGCCCGAGAAACCGCAGCACTACACGTACCTGAAAGAATTCCGCACAGAGCAGTGCCCACT
CTTTGTGCAACACAAATGCACGCAGCATCGGCCCTACACCTGCTTCCACTGGCACTTCGTGAACCAGCGG
CGCCGCCGGTCCATCCGCCGTCGGGACGGCACCTTCAATTACAGCCCTGACGTCTACTGCACCAAGTACG
ACGAGGCTACAGGCCTCTGCCCGGAGGGCGACGAGTGCCCATTCCTGCACAGAACCACAGGGGACACTGA
GCGCAGGTACCACCTTCGTTACTACAAAACTGGAATCTGCATCCACGAGACAGACTCGAAAGGCAACTGC
ACCAAAAACGGCCTGCACTGCGCTTTTGCCCACGGGCCCCATGACCTCCGCTCCCCTGTCTACGACATCA
GGGAGCTTCAGGCCATGGAGGCCTTGCAGAATGGCCAGACCACGGTAGAGGGGAGCATAGAGGGCCAGTC
GGCTGGGGCTGCGAGCCATGCCATGATAGAAAAGATCCTCAGCGAGGAGCCTCGGTGGCAAGAGACTGCT
TATGTGCTGGGGAACTATAAGACGGAGCCTTGCAAGAAGCCCCCGCGGCTGTGCCGCCAAGGCTATGCCT
GTCCCTACTACCACAACAGCAAGGACCGGCGGCGGAGCCCCCGGAAGCACAAATACAGGTCGTCTCCATG
TCCAAACGTCAAGCACGGGGATGAGTGGGGAGACCCTGGCAAGTGTGAGAACGGAGACGCCTGCCAGTAC
TGCCACACCCGCACCGAGCAGCAGTTCCACCCCGAGATCTACAAGTCCACCAAGTGCAACGACATGCAGC
AGTCGGGCAGCTGTCCCCGAGGACCCTTCTGCGCCTTTGCCCACGTAGAACAGCCACCCCTGAGTGACGA
CCTGCAGCCTTCCTCAGCTGTGTCCAGCCCCACCCAGCCAGGTCCTGTCCTGTACATGCCATCTGCCGCC
GGAGACTCGGTGCCTGTGAGCCCCTCCAGCCCGCATGCCCCTGACCTCAGTGCCCTCCTCTGTAGAAACA
GCAGCCTAGGCAGCCCGTCTAACCTCTGCGGCTCCCCACCGGGCTCCATCAGGAAGCCCCCAAACCTGGA
GGGCATCGTCTTCCCTGGGGAGTCTGGCCTGGCCCCTGGCAGCTATAAGAAGGCTCCCGGCTTCGAGAGG
GAAGACCAGGTGGGAGCCGAGTACCTGAAAAATTTCAAATGCCAGGCCAAATTAAAACCCCACTCATTAG
AGCCCAGGAGTCAAGAGCAGCCTCTGCTTCAGCCCAAACAGGACATGCTGGGCATCCTCCCCGCAGGCAG
CCCCCTGACCTCAAGCATCTCTTCTAGTATCACCTCCAGCCTGGCAGCTACCCCCCCTAGCCCAGTGGGC
ACCAGCAGCGTCCCCGGCATGAATGCAAACGCTCTGCCCTTCTACCCCACCAGCGACACGGTAGAGTCAG
TCATAGAGTCTGCTTTGGATGACCTGGACCTGAATGAGTTTGGCGTGGCCGCCCTGGAGAAGACTTTCGA
TAACAGCACAGTGCCCCACCCAGGAAGCATCACCATCGGCGGCAGCTTGCTGCAGAGCTCTGCACCCGTG
AACATCCCCGGCTCCTTGGGCAGCTCTGCCTCCTTCCACTCAGCATCCCCGTCCCCTCCCGTCAGCCTCT
CCTCGCATTTCCTGCAGCAGCCCCAGGGCCACCTGAGTCAGTCGGAAAACACATTTTTGGGAACCTCAGC
ATCACATGGATCTTTGGGTCTGAACGGGATGAACAGCAGCATCTGGGAGCATTTTGCCTCTGGAAGCTTC
TCCCCGGGCACTTCCCCCGCTTTCCTATCAGGGCCAGGGGCTGCCGAGCTGGCCCGACTTCGGCAAGAGC
TGGATGAAGCCAACAGCACCATCAAGCAGTGGGAGGAGTCCTGGAAGCAGGCCAAGCAGGCTTGTGATGC
CTGGAAGAAAGAGGCGGAGGAGGCTGGTGAGCGGGCCAGTGCGGCGGGCGCCGAGTGCGAGCTGGCCCGG
GAGCAGCGGGATGCACTGGAGGTGCAGGTGAAGAAGCTCCAGGAGGAGCTGGAGCGGCTACACGCGGGGC
CTGAGCCCCAGGCCCTGCCCGCCTTCTCCGACCTGGAGGCGCTCTCACTCTCCACCCTCTACTCCCTCCA
GAAACAACTGCGGGCCCACCTGGAACAAGTGGACAAGGCCGTGTTCCACATGCAGTCGGTGAAATGCCTT
AAGTGTCAGGAACAGAAGCGGGCAGTGCTGCCGTGCCAACACGCTGCGCTGTGTGAGCTCTGCGCTGAGG
GCAGCGAGTGCCCCATCTGCCAGCCTGGCCGGGCCCACACCCTCCAGTCGTGA

Translation (810 aa):
MSKGPGPGGSAASSAPPAATAQVLQAQPEKPQHYTYLKEFRTEQCPLFVQHKCTQHRPYTCFHWHFVNQR
RRRSIRRRDGTFNYSPDVYCTKYDEATGLCPEGDECPFLHRTTGDTERRYHLRYYKTGICIHETDSKGNC
TKNGLHCAFAHGPHDLRSPVYDIRELQAMEALQNGQTTVEGSIEGQSAGAASHAMIEKILSEEPRWQETA
YVLGNYKTEPCKKPPRLCRQGYACPYYHNSKDRRRSPRKHKYRSSPCPNVKHGDEWGDPGKCENGDACQY
CHTRTEQQFHPEIYKSTKCNDMQQSGSCPRGPFCAFAHVEQPPLSDDLQPSSAVSSPTQPGPVLYMPSAA
GDSVPVSPSSPHAPDLSALLCRNSSLGSPSNLCGSPPGSIRKPPNLEGIVFPGESGLAPGSYKKAPGFER
EDQVGAEYLKNFKCQAKLKPHSLEPRSQEQPLLQPKQDMLGILPAGSPLTSSISSSITSSLAATPPSPVG
TSSVPGMNANALPFYPTSDTVESVIESALDDLDLNEFGVAALEKTFDNSTVPHPGSITIGGSLLQSSAPV
NIPGSLGSSASFHSASPSPPVSLSSHFLQQPQGHLSQSENTFLGTSASHGSLGLNGMNSSIWEHFASGSF
SPGTSPAFLSGPGAAELARLRQELDEANSTIKQWEESWKQAKQACDAWKKEAEEAGERASAAGAECELAR
EQRDALEVQVKKLQEELERLHAGPEPQALPAFSDLEALSLSTLYSLQKQLRAHLEQVDKAVFHMQSVKCL
KCQEQKRAVLPCQHAALCELCAEGSECPICQPGRAHTLQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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