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Report for CCDS28804.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28804.1 Public Mus musculus 17 Clic5 23 108 98 CCDS HistoryNCBI Gene:224796Re-query CCDS DB by CCDS ID:28804.1Re-query CCDS DB by GeneID:224796See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28804.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024755.6 ENSMUSP00000024755.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024755.6Link to Ensembl Protein Viewer:ENSMUSP00000024755.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000024755Re-query CCDS DB by Protein ID:ENSMUSP00000024755
Original member Current member NCBI NM_172621.2 NP_766209.1 Accepted alive Link to Nucleotide Sequence:NM_172621.2Link to Protein Sequence:NP_766209.1Re-query CCDS DB by Nucleotide ID:NM_172621Re-query CCDS DB by Protein ID:NP_766209Link to BLAST:NP_766209.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766209.1 251 Q8BXK9 251 100% 0 0

Chromosomal Locations for CCDS 28804.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 44188899 44188961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44237133 44237242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44242034 44242159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44248720 44248826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44270491 44270672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44275214 44275381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (756 nt):
ATGACGGACTCAGCGACAACTAATGGGGACGACAGGGACCCCGAGATCGAGCTCTTCGTGAAGGCTGGGA
TCGACGGGGAAAGCATTGGCAACTGTCCCTTCTCTCAGCGTCTCTTCATGATCCTCTGGCTGAAAGGAGT
CGTGTTCAATGTCACCACCGTGGATCTGAAAAGAAAGCCAGCCGATCTACACAACCTGGCTCCTGGCACG
CACCCGCCCTTCCTGACCTTCAATGGGGATGTGAAGACAGATGTCAACAAGATTGAAGAGTTCCTGGAGG
AGACCCTAACCCCCGAGAAGTACCCCAAACTGGCTGCAAAACACCGGGAATCTAACACCGCGGGCATCGA
CATCTTCTCCAAGTTCTCAGCCTACATCAAAAACACCAAACAACAGAACAATGCTGCCCTTGAGAGAGGC
TTGACAAAGGCGCTGAGGAAGCTGGATGACTACCTAAACAGCCCTCTGCCAGAGGAGATTGACACCAACA
CCCACGGGGACGAGAAGGGGTCCCAGCGCAAGTTCCTGGATGGGGATGAGCTGACCCTGGCCGACTGCAA
TCTGCTGCCCAAGCTGCATGTGGTCAAGATTGTGGCTAAGAAGTACCGAAACTATGACATCCCAGCTGAG
ATGACAGGCTTGTGGCGATACCTCAAGAATGCCTATGCACGGGACGAGTTCACCAACACCTGTGCAGCTG
ACAGTGAGATCGAGTTGGCCTACGCAGATGTCGCCAGGCGCCTCAGCCGATCGTGA

Translation (251 aa):
MTDSATTNGDDRDPEIELFVKAGIDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPADLHNLAPGT
HPPFLTFNGDVKTDVNKIEEFLEETLTPEKYPKLAAKHRESNTAGIDIFSKFSAYIKNTKQQNNAALERG
LTKALRKLDDYLNSPLPEEIDTNTHGDEKGSQRKFLDGDELTLADCNLLPKLHVVKIVAKKYRNYDIPAE
MTGLWRYLKNAYARDEFTNTCAADSEIELAYADVARRLSRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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