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Report for CCDS15372.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15372.1 Public Mus musculus 1 Shcbp1l 23 108 98 CCDS HistoryNCBI Gene:71836Re-query CCDS DB by CCDS ID:15372.1Re-query CCDS DB by GeneID:71836See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 15372.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042373.11 ENSMUSP00000036347.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042373.11Link to Ensembl Protein Viewer:ENSMUSP00000036347.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000042373Re-query CCDS DB by Protein ID:ENSMUSP00000036347
Original member Current member NCBI NM_001033162.2 NP_001028334.1 Accepted alive Link to Nucleotide Sequence:NM_001033162.2Link to Protein Sequence:NP_001028334.1Re-query CCDS DB by Nucleotide ID:NM_001033162Re-query CCDS DB by Protein ID:NP_001028334Link to BLAST:NP_001028334.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028334.1 639 Q3TTP0 639 100% 0 0

Chromosomal Locations for CCDS 15372.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 153425224 153425586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153428560 153428709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153433175 153433389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153435763 153435849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153435918 153436136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153437525 153437630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153445798 153445951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153447724 153447974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153448901 153449023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 153452213 153452464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1920 nt):
ATGGAGTCGGATGCCACGACCTCAGAGCCCAAGGCCTCGGTCGGGAGTGACAGCTCGCCAGCGGAGCAGA
CTGTCTTAGCCACCCTCCGGGACTCGGTGGCCGCGCCCACCAGGGGCTTCATGTCCCCCGTGCGCTCGGT
AGTGGCCTCCCCGCGCCCCGTGAAGGGCAAGGCGGCACGGCGACGGCTCCAGCTCCCACCGGTCACCCAA
GCCGAAACATGTGACGAGGAGCCCGTGCCCGCGGTGCCTGAGGACCAGGAGGAAGCGCAGCCCCTGCCAC
CGATCTACGCATCCCCCATGAGGGGCATGTGGCGCAGCGAGAAGGTGGCTCTGTACTGCGACCAGGTGCT
ACAGGGCTCGAAGGCAGAAGATGCAGAGGAAGCTATGAGTAGATACCTGTTGGAGAAGCTGAAAGCGAAG
GACAGATGGCTCGGAGTCTGGAAGAGTAACCCGGAGCTCTTCTTTGAGAAATATGAAGAGGCGTCCATCC
CTTTTGTTGGGATCCTGGTCGAGGTAACGTGTAAACCCCGCCAGAACTTGTCGTCTTGTTTCAAAGTGAC
AGTTTCTGTGGCTGAGCCCTTTTCTTCTAACATTGCAAATATCCCTCGGGACTTGGTGGACGAGGTTCTG
GGCGAGCTGGAATACAGCGCGCCTCTCCTGGAGGTGTATCCCGTGGACGGGCAGGACGCCGATGTCCGAG
ACATTGCTCTGGCCCTGGAAGTTGTAAGGTTTTTTTATGATTTTCTTTGGAGAGACTGGGATGATGAAGA
AAATTGTGAGAATTATACTGCCCTTATTGAAGAAAGAATTAATCTGTGGTGCGACATCCAGGACGGGACA
ATCCCCGGCCCCATCGCGCAGCGCTTCAAGAAAACGCTCGAGAAGTACAAAAACAAGCGAGTTGAGCTCA
TCGAGTACCAGAGCAACATCAAGGAAGACCCGTCTGCGGCCGAGGCCGTCGAGTGCTGGAAGAAGTACTA
TGAGATAGTGATGCTCTGCGGGCTGCTGAAGATGTGGGAAGACTTGCGGCTAAGAGTTCATGGACCTTTC
TTTCCGAGGATTCTGAGACGTAGAAAAGGGAAGAGAGACTTTGGGAAGACTATAACCCACATCGTAGCCA
AAGTGATGACCACCGACATGGTAAAGAACTTGTCTTCTGACACACTTCTGCAGCAGCATAATGACCTGAA
CCTGGCTTTGGACAGCTGCTATAGTGGAGATATAGTAGTCATTTTCCCGGGAGAATATCAAGCTTCAAAC
CTCGCTTTGTTGACTGATGACATCACTATAAAGGGAGTTGGAAAGAGAGAAGAAATTATGATTACTTCTG
AACCTTCGCATGACAGTTTTGTGGTATCCAAAGCTGATAATGTGAAATTAATGCAGCTTTCTTTGATACA
ACAAGGGACAGTTGATGGCATTGTGGTGGTAGAGTCTGGTCACCTGACTCTTGAAAACTGCTTGCTAAAG
TGTGAAGGGACAGGAGTGTGCGTTCTCACAGGGGCTTCACTGACGATCACAAACAGTGAGATAACTGGTG
CCCAGGGTGCTGGTGTTGAACTGTATCCTGGGAGCATAGCCATTTTGGAAGGGAATGAGATTCATCACTG
TAATAACCTCAGAACCAGTGACAGCTCAAAGAGCACCTTAGGTGGTGTTAACATGAAGGTTCTTCCAGCA
CCCAAACTGAAGATGACGAACAATCATATCTACAACAACAATGGCTATGGAGTGAGCATTCTTCAGCCAT
CGGAACAGTTCTTTATTGTAGCAGAAGCAGCTCTCAACAAAGGGGCTGCTTCAGGAGATAAGAAAGATGA
CAAAATGCTCTCCAAAGTCATGCAAACTCTGAATGTGGAAATGAACAACAACAGGATAGAAGCCAACTTA
AAGGGGGATATTAGGATAGTCACCGGGTAA

Translation (639 aa):
MESDATTSEPKASVGSDSSPAEQTVLATLRDSVAAPTRGFMSPVRSVVASPRPVKGKAARRRLQLPPVTQ
AETCDEEPVPAVPEDQEEAQPLPPIYASPMRGMWRSEKVALYCDQVLQGSKAEDAEEAMSRYLLEKLKAK
DRWLGVWKSNPELFFEKYEEASIPFVGILVEVTCKPRQNLSSCFKVTVSVAEPFSSNIANIPRDLVDEVL
GELEYSAPLLEVYPVDGQDADVRDIALALEVVRFFYDFLWRDWDDEENCENYTALIEERINLWCDIQDGT
IPGPIAQRFKKTLEKYKNKRVELIEYQSNIKEDPSAAEAVECWKKYYEIVMLCGLLKMWEDLRLRVHGPF
FPRILRRRKGKRDFGKTITHIVAKVMTTDMVKNLSSDTLLQQHNDLNLALDSCYSGDIVVIFPGEYQASN
LALLTDDITIKGVGKREEIMITSEPSHDSFVVSKADNVKLMQLSLIQQGTVDGIVVVESGHLTLENCLLK
CEGTGVCVLTGASLTITNSEITGAQGAGVELYPGSIAILEGNEIHHCNNLRTSDSSKSTLGGVNMKVLPA
PKLKMTNNHIYNNNGYGVSILQPSEQFFIVAEAALNKGAASGDKKDDKMLSKVMQTLNVEMNNNRIEANL
KGDIRIVTG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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