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Report for CCDS24596.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24596.2 Public Mus musculus 11 Or2v2 23 108 98 CCDS HistoryNCBI Gene:258334Re-query CCDS DB by CCDS ID:24596.2Re-query CCDS DB by GeneID:258334See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 24596.1
The coding region has been updated to start at an alternate in-frame start codon that is supported by conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 24596.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060398.2 ENSMUSP00000056876.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060398.2Link to Ensembl Protein Viewer:ENSMUSP00000056876.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000060398Re-query CCDS DB by Protein ID:ENSMUSP00000056876
Original member Current member EBI ENSMUST00000109201.1 ENSMUSP00000104824.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109201.1Link to Ensembl Protein Viewer:ENSMUSP00000104824.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109201Re-query CCDS DB by Protein ID:ENSMUSP00000104824
Original member Current member EBI ENSMUST00000203007.1 ENSMUSP00000145057.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203007.1Link to Ensembl Protein Viewer:ENSMUSP00000145057.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203007Re-query CCDS DB by Protein ID:ENSMUSP00000145057
Original member Current member EBI ENSMUST00000215553.1 ENSMUSP00000150961.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215553.1Link to Ensembl Protein Viewer:ENSMUSP00000150961.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215553Re-query CCDS DB by Protein ID:ENSMUSP00000150961
Original member Current member NCBI NM_146337.1 NP_666449.2 Accepted alive Link to Nucleotide Sequence:NM_146337.1Link to Protein Sequence:NP_666449.2Re-query CCDS DB by Nucleotide ID:NM_146337Re-query CCDS DB by Protein ID:NP_666449Link to BLAST:NP_666449.2

Chromosomal Locations for CCDS 24596.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 49112777 49113724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGGCCATGTGGTTGAACCAGTCATCCACAGATGACTTTATCCTCTTGGGCATCTTTTCCTACAGCCCAA
GAGATCTTCTTCTTTTCTCTGTGGTCATGCTGGTCTTCACAGCAGCATTGTTTGGGAATGCCCTCCTCAT
CCTCCTCATCTGCACTGACCCCCGACTCCACACCCCCATGTACTTCTTCCTCAGTCAGCTCTCCCTCATG
GACATCATGTTGGTCTGTACCAATGTGCCAAAGATGGCAGTCAACTTCCTGTCTGGCAAGAAGTCCATCT
CCTTCGTAGGTTGTGGCATACAAATTGGCCTCTTTGTCTGTCTTGTGGGATCTGAGGGGCTCTTGCTGGG
ACTCATGGCTTATGATCGCTATGTGGCCATTAGCCACCCACTTCGCTATCCTGTCCTCATGAATCAGAAG
GTCTGTCTGCAGATCATTGGGAGCTCTTGGGCCTTTGGGATAGCAGATGGTCTGGTGCAGATGGTAGTGG
TAATGACCTTCCCCTATTGTAGCTTGAGGGAGGTGGACCACTTCTTCTGTGAGATGCTCTCCTTGCTAAA
GTTGGCCTGTGTGGACACATCCCTATTTGAGAAGATAGTGTTTTTTTGCTGTATCTTCATGCTGCTGTTT
CCCTTCTCCATCATTGTAGCCTCTTATACCCGCATCCTAGGAACCGTACTCCATATGCACTCTGCTAAAT
CCCAGAAAAAGGCTCTGGCCACCTGTTCCTCCCACATGGCAGCTGTCTCTTTCTTCTATGGAGCAGCCAT
GTTCATCTACCTGAGACCAAGACAATACCGAACCCCAAGCCAGGACAAGATGGTGTCTATCTTCTACACA
GTCCTTACTCCTATGCTCAACCCCCTCATTTATAGCTTGAGGAATCGCGATGTGATAGGAGCACTGCAGA
AAGGGCTGGACCGATGCAGGGTTGGCAGCCAGCCCTGA

Translation (315 aa):
MAMWLNQSSTDDFILLGIFSYSPRDLLLFSVVMLVFTAALFGNALLILLICTDPRLHTPMYFFLSQLSLM
DIMLVCTNVPKMAVNFLSGKKSISFVGCGIQIGLFVCLVGSEGLLLGLMAYDRYVAISHPLRYPVLMNQK
VCLQIIGSSWAFGIADGLVQMVVVMTFPYCSLREVDHFFCEMLSLLKLACVDTSLFEKIVFFCCIFMLLF
PFSIIVASYTRILGTVLHMHSAKSQKKALATCSSHMAAVSFFYGAAMFIYLRPRQYRTPSQDKMVSIFYT
VLTPMLNPLIYSLRNRDVIGALQKGLDRCRVGSQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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