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Report for CCDS18489.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18489.1 Public Mus musculus 4 Cyp4a12a 23 108 98 CCDS HistoryNCBI Gene:277753Re-query CCDS DB by CCDS ID:18489.1Re-query CCDS DB by GeneID:277753See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18489.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084343.3 ENSMUSP00000081370.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084343.3Link to Ensembl Protein Viewer:ENSMUSP00000081370.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000084343Re-query CCDS DB by Protein ID:ENSMUSP00000081370
Original member Current member NCBI NM_177406.3 NP_803125.2 Accepted alive Link to Nucleotide Sequence:NM_177406.3Link to Protein Sequence:NP_803125.2Re-query CCDS DB by Nucleotide ID:NM_177406Re-query CCDS DB by Protein ID:NP_803125Link to BLAST:NP_803125.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_803125.2 508 Q91WL5 508 100% 0 0

Chromosomal Locations for CCDS 18489.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 115299128 115299316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115300702 115300843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115301456 115301500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115301911 115302038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115326190 115326314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115326628 115326782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115327214 115327320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115327415 115327605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115327706 115327839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115328713 115328777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115328926 115329002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115331834 115332002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1527 nt):
ATGAGTGCCTCTGCTCTGAGCTCCATCAGATTCCCAGGAAGCATCTCTGAGTACCTTCAAGTAGCCTCTG
TGCTCAGCCTGCTCCTGCTGCTCTTCAAGACAGCCCAGCTCTACCTGCACAGGCAATGGCTACTCAGCAG
TACTCAGCAGTTCCCATCCCCACCTTCTCACTGGCTCTTTGGACACAAGATCTTAAAGGACCAGGACCTT
CAAGATATTCTAACTAGGATTAAGAATTTCCCAAGTGCCTGTCCACAGTGGCTCTGGGGAAGCAAAGTGC
GCATTCAAGTGTATGACCCTGACTACATGAAGCTGATTCTGGGGAGATCAGACCCAAAAGCTAATGGTTC
CTACAGATTTCTAGCTCCCTGGATTGGGCGTGGTTTGCTTATGCTGGATGGACAGACATGGTTTCAGCAC
CGACGAATGTTGACCCCAGCTTTCCACTATGACATTCTGAAGCCTTATACGGAAATCATGGCAGACTCTG
TTCGTGTAATGCTGGATAAATGGGAACAGATTGTTGGCCAGGATTCCACCCTGGAGATCTTTCGACACAT
CACCTTGATGACCTTGGACACCATCATGAAGTGTGCCTTCAGCCACGAGGGCAGTGTCCAGTTGGACAGA
AAATACAAGTCCTATATCCAGGCAGTTGAGGACCTGAACGATCTCGTTTTTTCCCGTGTGCGGAACATCT
TTCACCAGAATGACATCATCTACAGAGTGTCCTCTAATGGCTGCAAGGCTAACAGTGCCTGCAAACTTGC
CCATGATCACACAGACCAAGTGATCAAATCAAGGAGGATTCAACTTCAGGATGAGGAAGAGTTGGAAAAG
CTTAAGAAGAAAAGGCGATTGGATTTCCTGGACATCCTCCTATTTGCCAGAATGGAAAATGGAAAAAGCT
TATCTGATAAGGACCTTCGTGCTGAAGTGGATACTTTCATGTTCGAGGGCCATGACACCACAGCTAGTGG
TATCTCCTGGATCTTCTATGCTTTGGCCACAAATCCTGAACATCAACAGAGATGCAGGAAGGAGATCCAA
AGTCTCCTAGGAGATGGGACTTCTATCACCTGGAATGACCTGGACAAGATGCCCTATACTACCATGTGCA
TCAAGGAGGCCCTGAGGATCTACCCTCCTGTACCAAGTGTGAGCAGAGAGCTCAGCTCACCTGTCACCTT
TCCAGATGGACGTTCTTTACCCAAAGGTATCCATGTTATGCTCTCCTTTTATGGCCTTCATCACAACCCA
ACTGTGTGGCCAAATCCAGAGGTGTTTGATCCTTCTCGATTTGCACCAGGGTCTTCCCGGCACAGCCACT
CATTCCTGCCCTTCTCAGGAGGAGCAAGGAACTGCATTGGGAAACAGTTTGCGATGAATGAGCTGAAGGT
GGCTGTGGCCCTGACCCTGCTCCGCTTTGAGCTGCTGCCAGATCCCACCAGAGTCCCAATCCCCATACCA
AGAATTGTGTTGAAGTCCAAGAATGGGATCCACTTGCATCTCAAAAAGCTCCAATAA

Translation (508 aa):
MSASALSSIRFPGSISEYLQVASVLSLLLLLFKTAQLYLHRQWLLSSTQQFPSPPSHWLFGHKILKDQDL
QDILTRIKNFPSACPQWLWGSKVRIQVYDPDYMKLILGRSDPKANGSYRFLAPWIGRGLLMLDGQTWFQH
RRMLTPAFHYDILKPYTEIMADSVRVMLDKWEQIVGQDSTLEIFRHITLMTLDTIMKCAFSHEGSVQLDR
KYKSYIQAVEDLNDLVFSRVRNIFHQNDIIYRVSSNGCKANSACKLAHDHTDQVIKSRRIQLQDEEELEK
LKKKRRLDFLDILLFARMENGKSLSDKDLRAEVDTFMFEGHDTTASGISWIFYALATNPEHQQRCRKEIQ
SLLGDGTSITWNDLDKMPYTTMCIKEALRIYPPVPSVSRELSSPVTFPDGRSLPKGIHVMLSFYGLHHNP
TVWPNPEVFDPSRFAPGSSRHSHSFLPFSGGARNCIGKQFAMNELKVAVALTLLRFELLPDPTRVPIPIP
RIVLKSKNGIHLHLKKLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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