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Report for CCDS18490.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18490.1 Public Mus musculus 4 Cyp4a12b 23 108 98 CCDS HistoryNCBI Gene:13118Re-query CCDS DB by CCDS ID:18490.1Re-query CCDS DB by GeneID:13118See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18490.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094887.3 ENSMUSP00000092487.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094887.3Link to Ensembl Protein Viewer:ENSMUSP00000092487.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000094887Re-query CCDS DB by Protein ID:ENSMUSP00000092487
Original member Current member NCBI NM_172306.2 NP_758510.2 Accepted alive Link to Nucleotide Sequence:NM_172306.2Link to Protein Sequence:NP_758510.2Re-query CCDS DB by Nucleotide ID:NM_172306Re-query CCDS DB by Protein ID:NP_758510Link to BLAST:NP_758510.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_758510.2 508 A2A974 508 100% 0 0

Chromosomal Locations for CCDS 18490.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 115411683 115411871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115413257 115413398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115414011 115414055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115414470 115414597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115432442 115432566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115432881 115433035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115433467 115433573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115433668 115433858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115433959 115434092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115434968 115435032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115435180 115435256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 115438057 115438225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1527 nt):
ATGAGTGCCTCTGCTCTGAGCTCCATCAGATTCCCAGGAAGCATCTCTGAGTACCTTCAAGTAGCCTCTG
TGCTCAGCCTGCTCCTGCTGCTCTTCAAGACAGCCCAGCTCTACCTGCACAGGCAATGGCTACTCAGCAG
TACTCAGCAGTTCCCATCCCCACCTTCTCACTGGCTCTTTGGACACAAGATCTTAAAGGACCAGGACCTT
CAAGATATTCTAACTAGGATTAAGAATTTCCCAAGTGCCTGTCCACAGTGGCTCTGGGGAAGCAAAGTGC
GCATTCAAGTGTATGACCCTGACTACATGAAGCTGATTCTGGGGAGATCAGACCCAAAAGCTCATGGTTC
CTACAGATTTCTAGCTCCCTGGATTGGGCGTGGTTTGCTTCTGCTGGATGGACAGACATGGTTTCAGCAC
CGACGAATGTTGACCCCAGCTTTCCACTATGACATTCTGAAGCCTTACACGGAAATCATGGCAGACTCTG
TTCATGTCATGCTGGATAAATGGGAACAGATTGTTGGCCAGGATTCCACCCTGGAGATCTTCCAACACAT
CACCTTGATGACCTTGGACACCATCATGAAGTGTGCCTTCAGCCATGAGGGCAGTGTCCAGTTGGACAGA
AAATACAAGTCCTATATCCAGGCAGTTGAGGACCTGAACAATCTCTTTTTTCTCCGTGTGCGGAACATCT
TTCACCAGAATGACATCATCTACAGAGTGTCCTCTAATGGCTGCTTGGCCAACAGTGCCTGCCAACTTGC
CCATGATCACACAGACCAAGTGATCAAATCAAGGAGGAGTCAACTTCAGGATGAGGAAGAGTTGGAAAAG
CTTAAGAAGAAAAGGCGATTGGATTTCCTGGACATCCTCCTATTTGCCAGAATGGAAAATGGAAAAAGCT
TATCTGATAAGGACCTTCGTGCTGAAGTGGATACTTTCATGTTCGAGGGCCATGACACCACAGCTAGTGG
TATCTCCTGGATCTTCTATGCTTTGGCCACAAATCCTGAACATCAACAGAGATGCAGGAAGGAGATCCAA
AGTCTCTTAGGAGATGGGGCTTCTATCACCTGGAACGACCTGGACAAGATGCCCTATACTACCATGTGCA
TCAAGGAGGCCCTGAGGATCTACCCCCCTGTACCAAGTGTGAGCAGAGAGCTCAGCTCACCTGTCACCTT
TCCTGATGGACGTTCTTTACCCAAAGGTATCCATGTCATGCTCTCCTTTTATGGCCTTCATCACAACCCA
ACTGTGTGGCCAAATCCAGAGGTGTTTGATCCTTCTCGATTTGCACCAGGGTCTTCCCGGCACAGCCACT
CATTCCTGCCCTTCTCAGGAGGAGCAAGGAACTGCATTGGGAAACAGTTTGCGATGAATGAGCTGAAGGT
GGCTGTGGCCCTGACCCTGCTCCGCTTTGAGCTGCTGCCAGATCCCACCAGAGTCCCAATCCCCATACCA
AGAATTGTGTTGAAGTCCAAGAATGGGATCCACTTGCATCTCAAAAAGCTCCAATAA

Translation (508 aa):
MSASALSSIRFPGSISEYLQVASVLSLLLLLFKTAQLYLHRQWLLSSTQQFPSPPSHWLFGHKILKDQDL
QDILTRIKNFPSACPQWLWGSKVRIQVYDPDYMKLILGRSDPKAHGSYRFLAPWIGRGLLLLDGQTWFQH
RRMLTPAFHYDILKPYTEIMADSVHVMLDKWEQIVGQDSTLEIFQHITLMTLDTIMKCAFSHEGSVQLDR
KYKSYIQAVEDLNNLFFLRVRNIFHQNDIIYRVSSNGCLANSACQLAHDHTDQVIKSRRSQLQDEEELEK
LKKKRRLDFLDILLFARMENGKSLSDKDLRAEVDTFMFEGHDTTASGISWIFYALATNPEHQQRCRKEIQ
SLLGDGASITWNDLDKMPYTTMCIKEALRIYPPVPSVSRELSSPVTFPDGRSLPKGIHVMLSFYGLHHNP
TVWPNPEVFDPSRFAPGSSRHSHSFLPFSGGARNCIGKQFAMNELKVAVALTLLRFELLPDPTRVPIPIP
RIVLKSKNGIHLHLKKLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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