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Report for CCDS22832.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22832.1 Public Mus musculus 9 Panx1 23 108 98 CCDS HistoryNCBI Gene:55991Re-query CCDS DB by CCDS ID:22832.1Re-query CCDS DB by GeneID:55991See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22832.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164273.8 ENSMUSP00000126405.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164273.8Link to Ensembl Protein Viewer:ENSMUSP00000126405.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164273Re-query CCDS DB by Protein ID:ENSMUSP00000126405
Original member Current member NCBI NM_019482.2 NP_062355.2 Accepted alive Link to Nucleotide Sequence:NM_019482.2Link to Protein Sequence:NP_062355.2Re-query CCDS DB by Nucleotide ID:NM_019482Re-query CCDS DB by Protein ID:NP_062355Link to BLAST:NP_062355.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062355.2 426 Q9JIP4 426 100% 0 0

Chromosomal Locations for CCDS 22832.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 15006138 15006217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15007361 15008019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15010036 15010256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15021382 15021521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 15044857 15045037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1281 nt):
ATGGCCATCGCCCACTTGGCCACGGAGTATGTGTTCTCGGACTTCTTGCTGAAGGAGCCCACCGAGCCCA
AGTTCAAGGGGCTGCGACTGGAGCTGGCGGTGGACAAGATGGTCACATGTATTGCCGTGGGTCTACCTCT
GCTGCTCATCTCGCTGGCCTTCGCTCAGGAGATCTCCATCGGTACCCAGATAAGCTGCTTCTCCCCGAGT
TCTTTCTCCTGGCGACAGGCTGCCTTTGTGGATTCATACTGCTGGGCTGCTGTACAGCAGAAGAGCTCCC
TGCAGAGCGAGTCTGGAAACCTCCCACTGTGGCTGCACAAGTTCTTCCCCTACATCCTACTGCTGTTTGC
CATACTCCTGTACCTGCCCGCACTCTTCTGGCGCTTCTCTGCAGCTCCACACCTCTGCTCAGACCTGAAG
TTTATCATGGAGGAACTTGACAAAGTCTACAACCGCGCCATCAAGGCTGCCAAGAGTGCTCGAGATTTGG
ACCTAAGAGACGGACCTGGACCCCCAGGAGTGACTGAGAATGTGGGGCAGAGTCTGTGGGAGATATCTGA
AAGCCACTTCAAGTACCCAATCGTGGAGCAGTACTTGAAGACAAAAAAGAACTCTAGTCATTTAATCATG
AAATACATTAGCTGCCGGCTGGTGACATTTGTGGTTATACTGTTGGCATGTATCTACTTGAGCTATTACT
TCAGCCTCTCTTCACTCTCGGACGAGTTTCTGTGCAGCATCAAATCAGGCGTCCTGAAAAATGACAGCAC
CATCCCCGATCGCTTCCAGTGCAAGCTCATCGCCGTGGGCATCTTCCAGCTGCTCAGCCTCATTAACCTC
ATTGTGTATGCTCTGCTGATTCCCGTGGTCGTCTACACGTTCTTCATCCCATTCCGGCAGAAAACGGACA
TTCTCAAAGTGTATGAAATCCTGCCCACCTTCGATGTTCTACATTTCAAGTCTGAAGGCTACAATGACTT
GAGCCTCTACAACCTTTTTCTGGAAGAGAACATAAGTGAGCTCAAATCGTACAAGTGTCTGAAGGTGCTG
GAGAACATTAAAAGCAATGGGCAGGGCATTGACCCCATGCTACTCCTGACAAACCTGGGCATGATTAAGA
TGGACATCATTGATGGAAAAATTCCCACGTCCCTACAGACCAAGGGAGAGGACCAGGGCAGCCAGAGAGT
GGAGTTCAAAGATTTGGACCTGAGCAGCGAGGCTGCAGCAAACAATGGGGAGAAGAACTCTCGCCAGAGG
CTTCTGAATCCGTCCTGCTAA

Translation (426 aa):
MAIAHLATEYVFSDFLLKEPTEPKFKGLRLELAVDKMVTCIAVGLPLLLISLAFAQEISIGTQISCFSPS
SFSWRQAAFVDSYCWAAVQQKSSLQSESGNLPLWLHKFFPYILLLFAILLYLPALFWRFSAAPHLCSDLK
FIMEELDKVYNRAIKAAKSARDLDLRDGPGPPGVTENVGQSLWEISESHFKYPIVEQYLKTKKNSSHLIM
KYISCRLVTFVVILLACIYLSYYFSLSSLSDEFLCSIKSGVLKNDSTIPDRFQCKLIAVGIFQLLSLINL
IVYALLIPVVVYTFFIPFRQKTDILKVYEILPTFDVLHFKSEGYNDLSLYNLFLEENISELKSYKCLKVL
ENIKSNGQGIDPMLLLTNLGMIKMDIIDGKIPTSLQTKGEDQGSQRVEFKDLDLSSEAAANNGEKNSRQR
LLNPSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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