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Report for CCDS29124.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29124.1 Public Mus musculus 18 Epb41l4a 23 108 98 CCDS HistoryNCBI Gene:13824Re-query CCDS DB by CCDS ID:29124.1Re-query CCDS DB by GeneID:13824See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29124.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025234.6 ENSMUSP00000025234.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025234.6Link to Ensembl Protein Viewer:ENSMUSP00000025234.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000025234Re-query CCDS DB by Protein ID:ENSMUSP00000025234
Original member Current member NCBI NM_013512.2 NP_038540.2 Accepted alive Link to Nucleotide Sequence:NM_013512.2Link to Protein Sequence:NP_038540.2Re-query CCDS DB by Nucleotide ID:NM_013512Re-query CCDS DB by Protein ID:NP_038540Link to BLAST:NP_038540.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038540.2 686 P52963 686 100% 0 0

Chromosomal Locations for CCDS 29124.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 33797342 33797470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33798508 33798589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33798691 33798801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33801571 33801639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33802513 33802560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33810219 33810338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33824459 33824536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33825407 33825454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33828104 33828217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33828727 33828810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33832595 33832685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33854236 33854357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33859542 33859619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33861146 33861237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33874142 33874205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33874738 33874826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33876909 33876996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33878912 33879032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33880187 33880284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33886351 33886429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33891425 33891476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 33921830 33921934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 34005985 34006083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2061 nt):
ATGGGCTGTTTCTGCGCCGTTCCGGAAGAATTTTACTGCGAAGTTTTGCTCCTGGACGAGTCCAAGCTCA
CCCTCACCACCCAGCAGCAGGGCATCAAGAAGTCAACAAAAGGCTCTGTTGTCCTTGACCACGTTTTCCG
TCACATAAACCTCGTGGAGATAGATTATTTTGGGCTGCGGTACTGTGACAGAAGCCATCAGACATATTGG
CTGGATCCCGCAAAAACCCTTGCAGAACACAAGGAGCTGATCAACACTGGACCTCCATATACTTTGTATT
TTGGTATTAAATTCTATGCTGAAGATCCATGTAAACTCAAAGAAGAAATAACCAGATATCAGTTTTTCTT
ACAGGTGAAGCAAGATGCCCTTCAGGGCCGGCTGCCTTGCCCTGTCAATATTGCTGCTCAGATGGGGGCA
TATGCCATCCAGGCCGAACTGGGAGACCACGACCCATACAAGCACACTGCGGGGTATGTGTCGGAGTACC
GGTTTGTTCCTGATCAGAAGGAAGAGCTGGAAGAAGCCATAGAAAGGATTCATAAAACTCTAATGGGTCA
GGCTCCTTCCGAAGCTGAGCTGAATTACTTGAGGACTGCCAAATCCCTGGAGATGTATGGTGTTGACCTC
CATCCTGTCTATGGAGAAAATAAGTCCGAGTACTTCTTAGGCTTGACTCCATCGGGAGTTGTCGTCTATA
AGAATAAAAAGCAAGTGGGGAAGTATTTCTGGCCTCGGATTACAAAGGTGCACTTCAAGGAAACCCAGTT
TGAGCTCAGAGTCTTGGGAAAAGACTGTAATGAAACCTCATTCTTTTTTGAAGCTCGAAGCAAAACTGCT
TGCAAGCACCTCTGGAAATGCAGCGTAGAGCACCATACGTTTTTCAGAATGCCGGACACAGAATCAAATT
CATTATCAAGAAAACTCAGCAAGTTTGGGTCCATAAGTTATAAACATCGGTACAGTGGCAGGACAGCTTT
GCAAATGAGCCGAGATCTTTCTATCCAACTTCCCCGGCCCAATCAGAACGTGGTGAGAAGTCGAAGCAAG
ACTTACCCCAAGAGGGTAGCACAGACTCAGCCCACTGGATCAAACAACATCAATCGGATAACTGCAAACA
CGGAAAACGGGGAGAATGAAGGAACCACCAAGATCATTGCGCCTTCCCCAGTGAAAAGTTTTAAGAAAGC
AAAGAATGAAAACAGCCCTGACCCCCAAAGAAGCAAATCTCATGCACCTTGGGAAGAAAACGGACCGCAG
AGCGGACTATACAACTCCTCCAGTGACCGCACTAAGTCACCAAAGTTTCCCTGTGCCCGGCAGCGCAACC
TCTCCTGCGGCAGTGACAATGACTCCTCGCAACTGATGAGGCGAAGGAAAGCTCACAACAGTGGCGAAGA
CTCAGATCTCAAGCAGAGGAGGAGGTCACGCTCACGCTGTAACACAAGCAGTGGTAGTGAGTCAGAAAAT
TCTAACAGAGAACACCGGAAAAAGAGAAACAGAACCCGCCAGGAGAATGACATGGTTGACTCGGGGCCTC
AGTGGGAAGCCGTGTTAAGGAGACAGAAGGAAAAGAACCAAGCGGACCCTAACAACCGGAGATCCAGACA
CAGATCTCGCTCAAGAAGTCCTGACATCCAAGCAAAAGAAGAACTGTGGAAGCACATCCAGAAGGAGCTT
GTGGACCCATCTGGACTGTCAGAAGAGCAGCTGAAGGAGATCCCGTACACTAAAGTAGAGACTCAGGGTG
ACCCGGTCCGCATCCGGCATTCTCATTCCCCGCGGAGTTACCGGCAGTACCGAAGATCCCAGTGTTCAGA
CGGAGAACGATCCGTTCTCTCGGAAGTGAACTCAAAGACAGATCTTGTACCACCACTTCCGGTCACCCGT
TCCTCAGATGCTCAGGGGTCTGGAGGCTCGACAGTTCATCAGAGGAGAAATGGGTCTAAAGACAGCTTGA
TTGAAGAAAAGTCTCAGCTATCTACAATCAACCCGGCTGGGAAACCTACAGCAAAAACCATAAAAACCAT
CCAGGCTGCTCGCCTCAAGGCAGAGACTTGA

Translation (686 aa):
MGCFCAVPEEFYCEVLLLDESKLTLTTQQQGIKKSTKGSVVLDHVFRHINLVEIDYFGLRYCDRSHQTYW
LDPAKTLAEHKELINTGPPYTLYFGIKFYAEDPCKLKEEITRYQFFLQVKQDALQGRLPCPVNIAAQMGA
YAIQAELGDHDPYKHTAGYVSEYRFVPDQKEELEEAIERIHKTLMGQAPSEAELNYLRTAKSLEMYGVDL
HPVYGENKSEYFLGLTPSGVVVYKNKKQVGKYFWPRITKVHFKETQFELRVLGKDCNETSFFFEARSKTA
CKHLWKCSVEHHTFFRMPDTESNSLSRKLSKFGSISYKHRYSGRTALQMSRDLSIQLPRPNQNVVRSRSK
TYPKRVAQTQPTGSNNINRITANTENGENEGTTKIIAPSPVKSFKKAKNENSPDPQRSKSHAPWEENGPQ
SGLYNSSSDRTKSPKFPCARQRNLSCGSDNDSSQLMRRRKAHNSGEDSDLKQRRRSRSRCNTSSGSESEN
SNREHRKKRNRTRQENDMVDSGPQWEAVLRRQKEKNQADPNNRRSRHRSRSRSPDIQAKEELWKHIQKEL
VDPSGLSEEQLKEIPYTKVETQGDPVRIRHSHSPRSYRQYRRSQCSDGERSVLSEVNSKTDLVPPLPVTR
SSDAQGSGGSTVHQRRNGSKDSLIEEKSQLSTINPAGKPTAKTIKTIQAARLKAET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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