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Report for CCDS79884.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79884.1 Public Mus musculus 3 Impa1 23 108 98 CCDS HistoryNCBI Gene:55980Re-query CCDS DB by CCDS ID:79884.1Re-query CCDS DB by GeneID:55980See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79884.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000191670.5 ENSMUSP00000141345.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000191670.5Link to Ensembl Protein Viewer:ENSMUSP00000141345.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000191670Re-query CCDS DB by Protein ID:ENSMUSP00000141345
Original member NCBI NM_001310433.1 NP_001297362.1 Updated not alive Link to Nucleotide Sequence:NM_001310433.1Link to Protein Sequence:NP_001297362.1Re-query CCDS DB by Nucleotide ID:NM_001310433Re-query CCDS DB by Protein ID:NP_001297362
Current member NCBI NM_001310433.2 NP_001297362.1 Accepted alive Link to Nucleotide Sequence:NM_001310433.2Link to Protein Sequence:NP_001297362.1Re-query CCDS DB by Nucleotide ID:NM_001310433Re-query CCDS DB by Protein ID:NP_001297362Link to BLAST:NP_001297362.1

Chromosomal Locations for CCDS 79884.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 10315284 10315301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10316103 10316254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10322904 10323012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10324052 10324097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10326107 10326211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10328345 10328478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10328943 10329005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (627 nt):
ATGGCAGACCCTTGGCAGGAGTGCATGGACTATGCAGTAATCCTCGCGAGGCAAGCTGGAGAGATGATTC
GTGAAGCTTTAAAAAATGAGATGGATGTCATGATTAAAAGTTCTCCAGCCGACTTGGTAACAGTTACTGA
CCAAAAAGTTGAAAAAATGCTCATGTCTTCTATAAAGGAAAAGTATCCATGTCACAGCTTCATTGGTGAA
GAGTCTGTGGCAGCTGGGGAGAAGACGGTCTTCACAGAGCAGCCCACGTGGGTCATTGACCCCATTGATG
GAACGACTAACTTCGTGCATCGGTTTCCCTTTGTAGCTGTTTCAATTGGCTTCCTTGTGAATAAAGAGAT
GGAGTTTGGAATTGTGTACAGCTGTGTGGAAGATAAGATGTACACCGGCAGGAAAGGGAAAGGTGCCTTT
TGTAACGGTCAGAAGCTTCAGGTGTCCCAGCAGGAAGAATCCGGAGTGTTGGAACAGCTGCTGTTAATAT
GTGCCTTGTGGCAACGGGAGGAGCAGATGCCTATTATGAGATGGGAATCCACTGCTGGGACATGGCGGGA
GCTGGCATCATTGTCACCGAGGCAGGCGGAGTGCTCATGGATGTCACGGGTGGACCGTTCGATCTGA

Translation (208 aa):
MADPWQECMDYAVILARQAGEMIREALKNEMDVMIKSSPADLVTVTDQKVEKMLMSSIKEKYPCHSFIGE
ESVAAGEKTVFTEQPTWVIDPIDGTTNFVHRFPFVAVSIGFLVNKEMEFGIVYSCVEDKMYTGRKGKGAF
CNGQKLQVSQQEESGVLEQLLLICALWQREEQMPIMRWESTAGTWRELASLSPRQAECSWMSRVDRSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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