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Report for CCDS19124.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19124.1 Public Mus musculus 5 Asb10 23 108 98 CCDS HistoryNCBI Gene:117590Re-query CCDS DB by CCDS ID:19124.1Re-query CCDS DB by GeneID:117590See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19124.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048302.12 ENSMUSP00000041539.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048302.12Link to Ensembl Protein Viewer:ENSMUSP00000041539.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000048302Re-query CCDS DB by Protein ID:ENSMUSP00000041539
Original member Current member NCBI NM_080444.5 NP_536692.1 Accepted alive Link to Nucleotide Sequence:NM_080444.5Link to Protein Sequence:NP_536692.1Re-query CCDS DB by Nucleotide ID:NM_080444Re-query CCDS DB by Protein ID:NP_536692Link to BLAST:NP_536692.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_536692.1 467 Q91ZT7 467 100% 0 0

Chromosomal Locations for CCDS 19124.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 24533654 24533839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24534107 24534220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24537630 24538149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24539611 24539878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24540034 24540349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1404 nt):
ATGCTCATGAGTTGGTCCCCAGAGGAGTGCAGGGACCAGGGAGAGCCTCAGGGTGACAGATACAGCCTGT
GTGCCAAGCTGGTAGAGAAGCCTGATAGAGGGTCTGAGGAGCACCTTGAGCCTGGCCTGGGACCTATCAT
CATCCGCTCGGCTTCAGGACCCACCCTTGCCTTCTGGCAGGCAGTACTTGTTGGGGATGTGGGCTCTGTC
TCTCGAATCCTCTCGGACTCCAGCACTGGTCTGGCTCCCGATTCCATCTTTGATACCAGCGACCCAGAGC
GATGGAGAGATTACCGCTTCAACATCCGTGCTTTGAGACTCTGGTCTCTGACATATGAAGAGGAGCTGAC
CACTCCACTGCATGTGGCAGCCAGCCGTGGCCACACTGAAGTTCTTGAGTTGCTGCTGAGGCGTCGAGCC
AAGCCGGACAGTGCCCCCGGGGGCCGCACTGCACTGCATGAGGCCTGTTCTGCAGGTCATGCTGCCTGTG
TCCGTGTGCTGTTGGTGGCTGGAGCAGACCCCAACACCCTGGACCAGGATGGCAAACGCCCTTTGCATCT
CTGCCGGGGGCCTGGTATCCTCGAGTGTGTGGAGTTGCTCCTGAAGTTTGGAGCACAAGTGGATGGTCGG
ACTGAAGATGAAGAAGAGACCCCTCTGCACATAGCTGCCCGGCTTGGCCATGTGGAACTAGCAGATCTGC
TTCTGAGATGGGGTGCGTGTCCTGATGTCCGCAATTCTGAAGGTTGGACACCACTGCTGGCTGCCTGTGA
CATCCGCTGTCAATCCCCAAAGGATGCTGAGGCCACCACCAACCGCTGTTTTCAACTGTGCCGCTTGCTG
CTGTCTGTGGGGGCAGATGCTGATGCCGCCAACCAGGACAAGCAGCGGCCCCTGCACCTGGCCTGCCGCC
ACGGCCACTCAGCTGTTGTACAGCTGCTCCTGTCCTGTGGTGTCAACGCTAATGCCATGGACTACGGGGG
ACACACGCCTCTGCACTGTGCTCTGCTCGGTCCAACTACAGCAGTGGCCCACAGCCCTGAGCACACAGTG
CGAGATCTACTCAATCACGGTGCTGTCCGAGTCTGGCCAGGGGCACTCCCCAAGGTGCTGGATCGCTGGT
GCATGTCCCCACGGACCATCGAGGTCCTGATGAATACATACCGTGTAGTTCAGCTTCCTGAGGAGGCCAA
GGGCTTGGTGCCACCAGAGATTCTACAGAAGTACCATGGATTCTACTCTTCCCTCTTTGCCTTGGTGAGG
CAGCCCAGGTCGCTGCAGCATCTCTGCCGTTGTGCGCTCCGCAGTCACCTGGAGGGCTGTCTGCCCCATG
CACTACCGCGCCTTCCCCTGCCACCGCGCATGCTCCGCTTTCTGCAGCTGGACTTTGAGGATCTGCTCTA
CTAG

Translation (467 aa):
MLMSWSPEECRDQGEPQGDRYSLCAKLVEKPDRGSEEHLEPGLGPIIIRSASGPTLAFWQAVLVGDVGSV
SRILSDSSTGLAPDSIFDTSDPERWRDYRFNIRALRLWSLTYEEELTTPLHVAASRGHTEVLELLLRRRA
KPDSAPGGRTALHEACSAGHAACVRVLLVAGADPNTLDQDGKRPLHLCRGPGILECVELLLKFGAQVDGR
TEDEEETPLHIAARLGHVELADLLLRWGACPDVRNSEGWTPLLAACDIRCQSPKDAEATTNRCFQLCRLL
LSVGADADAANQDKQRPLHLACRHGHSAVVQLLLSCGVNANAMDYGGHTPLHCALLGPTTAVAHSPEHTV
RDLLNHGAVRVWPGALPKVLDRWCMSPRTIEVLMNTYRVVQLPEEAKGLVPPEILQKYHGFYSSLFALVR
QPRSLQHLCRCALRSHLEGCLPHALPRLPLPPRMLRFLQLDFEDLLY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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