NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS9047.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9047.1 Public Homo sapiens 12 SOCS2 24 110 108 CCDS HistoryNCBI Gene:8835Re-query CCDS DB by CCDS ID:9047.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9047.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340600.6 ENSP00000339428.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000340600.6Link to Ensembl Protein Viewer:ENSP00000339428.2Re-query CCDS DB by Nucleotide ID:ENST00000340600Re-query CCDS DB by Protein ID:ENSP00000339428
Original member Current member EBI ENST00000536696.6 ENSP00000442898.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000536696.6Link to Ensembl Protein Viewer:ENSP00000442898.2Re-query CCDS DB by Nucleotide ID:ENST00000536696Re-query CCDS DB by Protein ID:ENSP00000442898
Original member Current member EBI ENST00000549122.5 ENSP00000447161.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000549122.5Link to Ensembl Protein Viewer:ENSP00000447161.1Re-query CCDS DB by Nucleotide ID:ENST00000549122Re-query CCDS DB by Protein ID:ENSP00000447161
Original member Current member EBI ENST00000549206.5 ENSP00000448815.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000549206.5Link to Ensembl Protein Viewer:ENSP00000448815.1Re-query CCDS DB by Nucleotide ID:ENST00000549206Re-query CCDS DB by Protein ID:ENSP00000448815
Original member Current member EBI ENST00000551556.2 ENSP00000449227.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000551556.2Link to Ensembl Protein Viewer:ENSP00000449227.1Re-query CCDS DB by Nucleotide ID:ENST00000551556Re-query CCDS DB by Protein ID:ENSP00000449227
Original member Current member EBI ENST00000622746.4 ENSP00000481249.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000622746.4Link to Ensembl Protein Viewer:ENSP00000481249.1Re-query CCDS DB by Nucleotide ID:ENST00000622746Re-query CCDS DB by Protein ID:ENSP00000481249
Original member Current member NCBI NM_001270467.2 NP_001257396.1 Accepted alive Link to Nucleotide Sequence:NM_001270467.2Link to Protein Sequence:NP_001257396.1Re-query CCDS DB by Nucleotide ID:NM_001270467Re-query CCDS DB by Protein ID:NP_001257396Link to BLAST:NP_001257396.1
Original member Current member NCBI NM_001270468.2 NP_001257397.1 Accepted alive Link to Nucleotide Sequence:NM_001270468.2Link to Protein Sequence:NP_001257397.1Re-query CCDS DB by Nucleotide ID:NM_001270468Re-query CCDS DB by Protein ID:NP_001257397Link to BLAST:NP_001257397.1
Original member Current member NCBI NM_001270469.2 NP_001257398.1 Accepted alive Link to Nucleotide Sequence:NM_001270469.2Link to Protein Sequence:NP_001257398.1Re-query CCDS DB by Nucleotide ID:NM_001270469Re-query CCDS DB by Protein ID:NP_001257398Link to BLAST:NP_001257398.1
Original member Current member NCBI NM_001270470.1 NP_001257399.1 Accepted alive Link to Nucleotide Sequence:NM_001270470.1Link to Protein Sequence:NP_001257399.1Re-query CCDS DB by Nucleotide ID:NM_001270470Re-query CCDS DB by Protein ID:NP_001257399Link to BLAST:NP_001257399.1
Original member Current member NCBI NM_001270471.2 NP_001257400.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001270471.2Link to Protein Sequence:NP_001257400.1Re-query CCDS DB by Nucleotide ID:NM_001270471Re-query CCDS DB by Protein ID:NP_001257400Link to BLAST:NP_001257400.1
Original member Current member NCBI NM_003877.5 NP_003868.1 Accepted alive Link to Nucleotide Sequence:NM_003877.5Link to Protein Sequence:NP_003868.1Re-query CCDS DB by Nucleotide ID:NM_003877Re-query CCDS DB by Protein ID:NP_003868Link to BLAST:NP_003868.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001257396.1 198 O14508 198 100% 0 0
NP_001257397.1 198 O14508 198 100% 0 0
NP_001257398.1 198 O14508 198 100% 0 0
NP_001257399.1 198 O14508 198 100% 0 0
NP_001257400.1 198 O14508 198 100% 0 0
NP_003868.1 198 O14508 198 100% 0 0

Chromosomal Locations for CCDS 9047.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 93572898 93573036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 93574722 93575179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (597 nt):
ATGACCCTGCGGTGCCTTGAGCCCTCCGGGAATGGCGGGGAAGGGACGCGGAGCCAGTGGGGGACCGCGG
GGTCGGCGGAGGAGCCATCCCCGCAGGCGGCGCGTCTGGCGAAGGCCCTGCGGGAGCTCGGTCAGACAGG
ATGGTACTGGGGAAGTATGACTGTTAATGAAGCCAAAGAGAAATTAAAAGAGGCACCAGAAGGAACTTTC
TTGATTAGAGATAGCTCGCATTCAGACTACCTACTAACAATATCTGTTAAAACATCAGCTGGACCAACTA
ATCTTCGAATCGAATACCAAGACGGAAAATTCAGATTGGACTCTATCATATGTGTCAAATCCAAGCTTAA
ACAATTTGACAGTGTGGTTCATCTGATCGACTACTATGTTCAGATGTGCAAGGATAAGCGGACAGGTCCA
GAAGCCCCCCGGAACGGCACTGTTCACCTTTATCTGACCAAACCGCTCTACACGTCAGCACCATCTCTGC
AGCATCTCTGTAGGCTCACCATTAACAAATGTACCGGTGCCATCTGGGGACTGCCTTTACCAACAAGACT
AAAAGATTACTTGGAAGAATATAAATTCCAGGTATAA

Translation (198 aa):
MTLRCLEPSGNGGEGTRSQWGTAGSAEEPSPQAARLAKALRELGQTGWYWGSMTVNEAKEKLKEAPEGTF
LIRDSSHSDYLLTISVKTSAGPTNLRIEYQDGKFRLDSIICVKSKLKQFDSVVHLIDYYVQMCKDKRTGP
EAPRNGTVHLYLTKPLYTSAPSLQHLCRLTINKCTGAIWGLPLPTRLKDYLEEYKFQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH