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Report for CCDS80893.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80893.1 Public Mus musculus 8 Ankle1 23 108 98 CCDS HistoryNCBI Gene:234396Re-query CCDS DB by CCDS ID:80893.1Re-query CCDS DB by GeneID:234396See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80893.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120725.1 ENSMUSP00000112797.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120725.1Link to Ensembl Protein Viewer:ENSMUSP00000112797.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120725Re-query CCDS DB by Protein ID:ENSMUSP00000112797
Original member Current member NCBI NM_001310502.1 NP_001297431.1 Accepted alive Link to Nucleotide Sequence:NM_001310502.1Link to Protein Sequence:NP_001297431.1Re-query CCDS DB by Nucleotide ID:NM_001310502Re-query CCDS DB by Protein ID:NP_001297431Link to BLAST:NP_001297431.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297431.1 514 A8VU90-2 514 100% 0 0

Chromosomal Locations for CCDS 80893.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 71406036 71406097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71406187 71406339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71406679 71406784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71406862 71406973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71407273 71407749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71407871 71408042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71408665 71408824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71408922 71409051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71409227 71409399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1545 nt):
ATGGCCGATACTGCATGCTTGGCTCTGAGGCTGCTAGCAGCACTACGCGAGGAGGAGGCGCGGGCTGTGG
AGGAGCTGCTGCGCCTCGGAGCGGACCCCAACCTGGTGTTGGACGATGGCGCTGCGGCGGTGCACCTGGC
AGCCAGAGCGAGCCACCCGCGCGCCCTGCATTGCCTTCGGATGCTGCTGCGCTGGGGAGCGGATCCCAAT
GCTCGGTCCGCGGAGGGGCTGACGCCTGTGCATGTGGCTGCCGCGTGGGGCTGTTGTGGTGCTCTGGAGT
TGCTGCTGAGCCGAGGAGGTGACCCCACACTGCGGGACCAGGATGGGCTCAGGCCCTTGGACTGGGCACT
ACAGCAGCGACACCACAACTGCGCACGAGTGCTGCAGGAGCTGGACACGCCCACCCAGCCTGATGAGACC
CGAGAACCCACAGCAGAGTCTTCTGGAGTTTCTCAAGATTCGGAGTTGCACGTGCATAGAGCTGAGCTGG
AGGTGGAGGCTGTAGAGGTGGCTGTGCATCCCCAGAGCTCTGAGGCCACCGAGAACTCAGACTACAGCAG
CGATGCTTCGTTTGTCACTGCAGTGGAGGACTCTCTGCAGCCCGGGCGCCCTGGGGGGGCATTGGAGCTA
GTGGCTGGCTTGTGGGTAACCCGTGGGGCTGTGTCAGCTGGGAAGGGAGCACCCAACTGCCAGCCGCAGG
TCCTGACATTGACTGCAAGGGACACGGACAAACCCGTACTGCCTGGTGATGGGGATCTGGGGGCTTTGCA
CCCCCACAGTTCGGTGCCCCCCATGTCGGATCTGCAGCTCCTCCAGGCCCTGCGGGCGCTGGGCTATAGC
CCTGGACCCGTCACACCTTTCACCAGAGGACACTATCTACGGCGGCTGCAGGAAGCCCAGGCTAGCCGTG
CTGATGTAGGGCATAGCCAAGAACTGGCGGAGGCACTAAGGACAGGCACCATCCCTGACTGCCAGGTGGA
TGAGGAAGCCCTGGCTCAGTGCTTTCAGCGGCTGGATCCCTTGAAGAAGTGGCGGGAAGGCATTACAAAG
TCTAGTTTTACGTATCTACTTCTCGACCCCAGGCTGACGAAGGACCTGCCGGCCCGAGCCTCTTCCCTCA
CACTGGCTGAGTGTCTGCAATGTTTCGTGAGAGCCATCTTCTATGTGGGCAAGGGAACCCGAGCCCGACC
AGATGCCCACCTCTGGGAAGCCTTTGGCTACCATGACCAGCCAAGGAAACAGGTCTGTCCCAAGGTTCGC
CGGATCTTAGACATCTGGGCTAGTGGCCGGGGCATCATCTCTCTGCACTGCTTCCAGCATGTGGTGGCCA
TGGAAGCGTACACTCGGGAAGCCTGTCTGTTGGATGCCCTAGGTCTCCAGACACTGACCAACCAGAAACA
AGGGCACTACTATGGAGTGGTTGCCCATTGGCCACCCTCTCGGCGTCGGCGTTTGGGGGTGCACCTGCTA
CAGCGTGCTCTGCTGGTCTTCCTGGCTGAGGGGGAGAGAGAGCTGAGGCCTCAGGACATTCAGGCTCGAG
GCTGA

Translation (514 aa):
MADTACLALRLLAALREEEARAVEELLRLGADPNLVLDDGAAAVHLAARASHPRALHCLRMLLRWGADPN
ARSAEGLTPVHVAAAWGCCGALELLLSRGGDPTLRDQDGLRPLDWALQQRHHNCARVLQELDTPTQPDET
REPTAESSGVSQDSELHVHRAELEVEAVEVAVHPQSSEATENSDYSSDASFVTAVEDSLQPGRPGGALEL
VAGLWVTRGAVSAGKGAPNCQPQVLTLTARDTDKPVLPGDGDLGALHPHSSVPPMSDLQLLQALRALGYS
PGPVTPFTRGHYLRRLQEAQASRADVGHSQELAEALRTGTIPDCQVDEEALAQCFQRLDPLKKWREGITK
SSFTYLLLDPRLTKDLPARASSLTLAECLQCFVRAIFYVGKGTRARPDAHLWEAFGYHDQPRKQVCPKVR
RILDIWASGRGIISLHCFQHVVAMEAYTREACLLDALGLQTLTNQKQGHYYGVVAHWPPSRRRRLGVHLL
QRALLVFLAEGERELRPQDIQARG


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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