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Report for CCDS27320.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27320.1 Public Mus musculus 14 Obi1 23 108 98 CCDS HistoryNCBI Gene:72486Re-query CCDS DB by CCDS ID:27320.1Re-query CCDS DB by GeneID:72486See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27320.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022716.3 ENSMUSP00000022716.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022716.3Link to Ensembl Protein Viewer:ENSMUSP00000022716.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000022716Re-query CCDS DB by Protein ID:ENSMUSP00000022716
Original member Current member NCBI NM_026047.4 NP_080323.3 Accepted alive Link to Nucleotide Sequence:NM_026047.4Link to Protein Sequence:NP_080323.3Re-query CCDS DB by Nucleotide ID:NM_026047Re-query CCDS DB by Protein ID:NP_080323Link to BLAST:NP_080323.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080323.3 722 Q8K2Y0-1 722 99.8615% 0 1

Chromosomal Locations for CCDS 27320.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 104478767 104480297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104503347 104503435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104506093 104506341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104507939 104508030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104510302 104510437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 104522541 104522612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2169 nt):
ATGGCTCAGACCGTGCAGAACGTTACATTGTCCCTCACTCTGCCCATCACGTGCCACATTTGCTTGGGGA
AGGTACGTCAGCCTGTCGTATGCACCAACAACCATGTGTTTTGTTCCATTTGCATCGACTTGTGGTTGAA
GAATAATAGCCAGTGTCCAGCCTGCAGAGTCCCGATCACTCCTGAAAACCCTTGCAAAGAGATTATTGGA
GGAACGAGTGAGAGTGAGCCCATGCTGAGCCATACGGTCAGGAAGCACCTGCGGAAAACCAGACTGGAGC
TACTGCACAGAGAGTATGAGGATGAAATAGATTGCTTGCAGAAAGAGGTAGAAGAACTTAAAAGTAAAAA
TCTCAGCTTGGAGTCACAGATCAAGACCATTCTGGATCCTTTAGCGTTGATGCAGGGCAGTCAAAATGAA
GACAAACATCCACTGGCCGATAATCCAAGTAAAATGGACCCAGACTCAGTAGTAGAGTGGAAGAAAAAGC
TGAGAACAGCTAATGAAATATATGAAAAAGTAAAAGATGATGTGGATAAGTTAAAAGAGGCAAATAAAAA
ATTGAAGTTGGAAAACGGTGGCCTGCTGAGGGAGAATTTACGGCTGAAGGCTGAAGTTGACAACAGATCT
CCTCAAAAGTTTGGAAGGTTTACAGTTGCTGCTCTTCAGTCCAAAGTAGAACAGTATGAACGTGAAACCA
ATCGCCTCAAGAAAGCTCTAGAACGAAGTGATAAATATATAGAGGAACTAGAGTCTCAAGTAGCACACCT
GAAACACTCAGAGGAGGCCAAGGAAGACGTGGATGCTCTGTGCCAGAGGGCACCCTCTGCAGATAGCAAG
GGGCCCAACGGCAGCGATGAGCTTGGACCACCAAAGAATCAGAGTGACAGTGCCAGAAAGCAGGCTGGCT
CGGCCAGTGCTTCTCACCTGGCCTCACCTTCTAGCAGCAGACTAGCTGACTCCGGTTCTGTCAGACAGGA
GAGCACCAGCAGGACTGAACCAAACTGTCCCCAAAACAAAGACAGATACCCCAAGCCCACAGAACCTCGG
CTGGGTGCAAGAGAGACTCCGATGGACACTTACTTGGAAAGAGAGTGGGGCAGCAAGCCAAGCGACTGTG
CACCTTACAAAGAGGATGAGCTTTATGGTATCCCAGCTTCCTGCACTCCCTTGTCACTTAGCTGCCTTCA
GCTGAACACTCCAGAAAACAGAGAGAACCCTGTGATCAAAGCAGGGAGCTCCAAAAAGCATGCAAACCAT
CTCAGAAAACTGGTCTTTGATGATTTCTGTGATTCTCCAAATGCCTGTAATAACAATTCTTCAGAGGATG
ATAGAAGGGAAAATGAAAAGAAATCAGACTGCTTTGCTTCCTCAAAGACAGGATTTTGGGATTGTTGCTC
CACAAGCTATGCCCAGAGCTTGGAGTTTGACGGTTCAGAGGGAAACGCAATAGCAAACTCTGTTGGGGAG
ATACCTTCAAAATTGAGTGAGAAGTCAGGATCGTGCTTGTCCAAGAGACTCAGCTGTATCCGCTCCCTCG
AAATGAATCGAACAAGAACATCCAGTGAGGCGTCCATGGATGCTGCTTATCTCGACAAAATCTCTGAGCT
GGACTCCATGATGTCAGAGTCTGACAACAGCAAGAGCCCTTGTAATAACGGTTTTAAATCGGTGGAGGTG
GAGGGGCCCTCAAAGTCACCTCAAGGCAGGGAGTTTCTCGAGGAACCTGACAAGTTACAAGAAGGAAGTA
AACTGAACCTTTCCAAACCTGCTCTCACAGCTGACGGGTTAGAGAGTGGGGGGGAGTGGAAACCCAGCTC
TTTCTTTCTCCTTTCTCCAGCTGACCACGAGATGAGTGAAGATTTTTCTCTCCACTCCACTTCTCATTCA
GGAACTAGTGAGGTCAAACCTCCAAACTGTTTGTTTCAGACAGAGTTTTCCCAGGGTGCTCTGTTAAGCA
GTTCCCAGGGATTATTTGAGGATCAGAGGTTTGGATCGTCCTTATTTAAGATGTCCTCAGAGATGCAGAG
CCTTCACAGCCCTCTTCAGTCTCCGTGGTCTGCTGCCTTTGTGCCTGAAAAGAGGAGTAAGAATGGGAAC
CAGTCAACCAAGAGAAAGATACAGAGCAGCCTTGCCAACGCCAGCCCGTCCAAAGCCACCAAAAGCTGA

Translation (722 aa):
MAQTVQNVTLSLTLPITCHICLGKVRQPVVCTNNHVFCSICIDLWLKNNSQCPACRVPITPENPCKEIIG
GTSESEPMLSHTVRKHLRKTRLELLHREYEDEIDCLQKEVEELKSKNLSLESQIKTILDPLALMQGSQNE
DKHPLADNPSKMDPDSVVEWKKKLRTANEIYEKVKDDVDKLKEANKKLKLENGGLLRENLRLKAEVDNRS
PQKFGRFTVAALQSKVEQYERETNRLKKALERSDKYIEELESQVAHLKHSEEAKEDVDALCQRAPSADSK
GPNGSDELGPPKNQSDSARKQAGSASASHLASPSSSRLADSGSVRQESTSRTEPNCPQNKDRYPKPTEPR
LGARETPMDTYLEREWGSKPSDCAPYKEDELYGIPASCTPLSLSCLQLNTPENRENPVIKAGSSKKHANH
LRKLVFDDFCDSPNACNNNSSEDDRRENEKKSDCFASSKTGFWDCCSTSYAQSLEFDGSEGNAIANSVGE
IPSKLSEKSGSCLSKRLSCIRSLEMNRTRTSSEASMDAAYLDKISELDSMMSESDNSKSPCNNGFKSVEV
EGPSKSPQGREFLEEPDKLQEGSKLNLSKPALTADGLESGGEWKPSSFFLLSPADHEMSEDFSLHSTSHS
GTSEVKPPNCLFQTEFSQGALLSSSQGLFEDQRFGSSLFKMSSEMQSLHSPLQSPWSAAFVPEKRSKNGN
QSTKRKIQSSLANASPSKATKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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