NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19296.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19296.1 Public Mus musculus 5 Pcdh7 23 108 98 CCDS HistoryNCBI Gene:54216Re-query CCDS DB by CCDS ID:19296.1Re-query CCDS DB by GeneID:54216See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19296.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068110.9 ENSMUSP00000066306.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068110.9Link to Ensembl Protein Viewer:ENSMUSP00000066306.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000068110Re-query CCDS DB by Protein ID:ENSMUSP00000066306
Original member Current member NCBI NM_018764.3 NP_061234.2 Accepted alive Link to Nucleotide Sequence:NM_018764.3Link to Protein Sequence:NP_061234.2Re-query CCDS DB by Nucleotide ID:NM_018764Re-query CCDS DB by Protein ID:NP_061234Link to BLAST:NP_061234.2

Chromosomal Locations for CCDS 19296.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 57719105 57722278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 57728114 57728149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3210 nt):
ATGCTGAGGATGCGGACCACGGGATGGGCGCGCGGCTGGTGCTTGGGCTGTTGTCTCCTTCTGCCGCTCT
GC
TTCAGCCTGGCCGCCGCCAAGCAGCTGCTCCGGTACCGGCTGGCCGAGGAGGGCCCCGCCGACGTGCG
G
ATCGGCAATGTGGCCTCGGACCTGGGCATCGTGACCGGCTCCGGCGAGGTGACTTTCAGCCTTGAGTCT
GGT
TCTGAGTATCTGAAGATTGACAACCTCACCGGCGAGCTGAGCACCAGTGAGCGGCGCATCGACCGAG
AA
AAGCTGCCCCAATGTCAGATGATCTTCGACGAGAACGAATGTTTCCTGGACTTCGAGGTGTCGGTGAT
A
GGGCCCTCACAGAGCTGGGTGGACCTGTTTGAGGGTCGGGTCATCGTGCTGGACATCAACGATAACACG
CCC
ACCTTCCCGTCGCCGGTGCTCACGCTCACGGTGGAGGAGAACCGGCCTGTAGGCACGCTCTACCTGC
TG
CCCACGGCCACCGATCGTGACTTTGGTCGCAATGGCATCGAACGCTACGAGCTGCTCCAGGAGCCCGG
G
GGTGGCGGCGGCAGCGGCGAGGGAAGGCGCTTGGGGCCGGCGGACAGCGCCCCCTACCCAGGGGGCGGC
GGG
AACAGCGCGAGCGGCGGCGGCTCTGGAGGCTCCAAGCGGCGGCTGGACGCGCCTGAGGGTGGCGGCG
GG
ACGAGTCCTAGTGGCCGAAGCAGTGTGTTTGAGCTTCAGGTGGCAGACACTCCAGACGGCGAGAAACA
A
CCGCAGCTGATCGTGAAGGGGGCGCTGGACCGGGAGCAGAGAGATTCCTATGAGCTGACCCTCCGAGTG
CGC
GATGGGGGCGACCCACCTCGGTCTTCGCAGGCCATCTTGCGGGTGCTCATCACCGACGTGAATGACA
AC
AGCCCCCGCTTCGAGAAGAGCGTGTATGAGGCTGACCTGGCTGAGAACAGCGCTCCGGGCACCCCCAT
C
CTACAGTTGCGCGCCACCGATTTGGATGTAGGGGTCAATGGACAGATCGAGTATGTATTTGGGGCTGCC
ACC
GAGTCGGTAAGACGGCTACTGCGCCTGGATGAAACGTCGGGCTGGCTCAGTGTCTTACACCGGATCG
AC
CGCGAGGAAGTGAACCAGTTGAGATTCACAGTAATGGCCCGTGACCGCGGGCAGCCCCCCAAGACTGA
T
AAGGCCACCGTAGTCCTCAACATCAAAGACGAGAACGACAACGTTCCCTCCATCGAAATTCGCAAGATA
GGG
CGCATCCCACTTAAGGACGGGGTGGCCAACGTAGCCGAAGATGTCCTGGTGGACACCCCCATCGCCC
TG
GTTCAGGTGTCCGACCGTGACCAAGGCGAGAACGGGGTAGTCACCTGTACCGTAGTGGGAGACGTTCC
T
TTCCAGCTTAAGCCAGCCAGCGACACAGAAGGCGATCAAAACAAGAAAAAGTACTTCCTGCACACATCA
GCC
CCACTAGACTATGAGACCACCCGGGAGTTCAACGTGGTCATAGTAGCTGTGGACTCTGGCAGTCCCA
GC
CTCTCCAGCAACAATTCCTTGGTGGTCAAGGTGGGAGACACTAATGACAACCCTCCTGTCTTTGGCCA
G
TCTGTGGTTGAGGTTTACTTTCCAGAGAACAACATTCCCGGGGAGAGGGTAGCCACAGTGCTGGCGACA
GAT
GCTGACAGCGGGAAGAATGCAGAGATCGCCTATTCACTGGACTCCTCAGTGATGGGGACTTTTGCCA
TC
GATCCCGATTCTGGAGACATCCTGGTCAATACAGTACTGGACCGGGAGCAGACTGACAGGTATGAGTT
T
AAAGTTAATGCCAAAGACAAAGGCATCCCAGTGCTGCAAGGCAGCACCACGGTGATTGTACAGGTGGCT
GAT
AAAAACGACAACGACCCTAAGTTTATGCAAGATGTCTTTACCTTTTATGTGAAGGAAAACTTACAAC
CC
AACAGCCCTGTGGGGATGGTCACCGTGATGGATGCTGACAAGGGACGGAATGCAGAGATGAGCCTGTA
C
ATAGAGGAGAACAGTAACATTTTTTCTATTGAAAATGACACAGGGACCATTTACTCCACAATGTCTTTT
GAC
AGGGAACATCAGACTACGTACACTTTCAGAGTGAAGGCTGTGGATGGGGGAGATCCTCCCAGGTCGG
CC
ACAGCCACAGTCTCTCTCTTTGTGATGGATGAAAATGACAACGCTCCCACAGTTACCCTTCCCAGAAA
C
ATTTCCTACACGTTGCTGCCACCTTCAAGTAATGTCAGGACAGTAGTAGCTACAGTGTTAGCGACAGAC
AGT
GATGATGGCATCAATGCGGACTTGAACTACAGCATTGTGGGAGGGAATCCTTTCAAGCTGTTTGAGA
TT
GATTCCACCAGTGGTGTGGTTTCCTTAGTGGGGAAACTCACCCAGAAGCATTATGGCTTGCACAGGCT
G
GTTGTGCAAGTGAATGACAGTGGCCAGCCTTCCCAGTCCACTACGACTTTGGTGCATGTATTTGTCAAT
GAA
AGTGTTTCCAATGCAACTGTAATTGACTCTCAGATAGTCCGAAGTTTGCATACCCCACTCACCCAGG
AT
ATAGCTGGTGACCCAAGCTATGAAATTAGCAAACAGAGACTTAGTATTGTCATTGGGGTGGTTGCTGG
C
ATTATGACAGTGATTCTAATCATTTTAATTGTCATGATGGCAAGATACTGCAGGTCCAAAAATAAAAAT
GGC
TACGAAGCTGGCAAAAAAGACCATGAGGACTTTTTTACACCCCAGCAGCATGACAAATCTAAAAAGC
CT
AAAAAGGACAAGAAAAACAAAAAATCTAAGCAGCCACTCTACAGCAGTATCGTCACTGTCGAAGCTTC
T
AAACCAAATGGACAGAGGTATGATAGTGTCAATGAGAAGCTGTCAGACAGCCCAAGCATGGGCCGATAC
CGA
TCTGTTAATGGTGGGCCTGGCAGTCCCGACCTGGCAAGGCATTACAAATCCAGTTCCCCATTGCCTA
CT
GTCCAGCTTCACCCCCAGTCACCAACTGCAGGGAAAAAACATCAAGCTGTACAAGATCTACCACCAGC
C
AACACATTTGTGGGAGCAGGAGACAACATTTCAATTGGATCAGATCACTGCTCCGAGTACAGCTGTCAA
ACA
AGTAACAAGTACAGCAAACAGATGCGTGTACATCCATACATTACGGTGTTTGGCTGA


Translation (1069 aa):
MLRMRTTGWARGWCLGCCLLLPLCFSLAAAKQLLRYRLAEEGPADVRIGNVASDLGIVTGSGEVTFSLES
G
SEYLKIDNLTGELSTSERRIDREKLPQCQMIFDENECFLDFEVSVIGPSQSWVDLFEGRVIVLDINDNT
P
TFPSPVLTLTVEENRPVGTLYLLPTATDRDFGRNGIERYELLQEPGGGGGSGEGRRLGPADSAPYPGGG
G
NSASGGGSGGSKRRLDAPEGGGGTSPSGRSSVFELQVADTPDGEKQPQLIVKGALDREQRDSYELTLRV
R
DGGDPPRSSQAILRVLITDVNDNSPRFEKSVYEADLAENSAPGTPILQLRATDLDVGVNGQIEYVFGAA
T
ESVRRLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVPSIEIRKI
G
RIPLKDGVANVAEDVLVDTPIALVQVSDRDQGENGVVTCTVVGDVPFQLKPASDTEGDQNKKKYFLHTS
A
PLDYETTREFNVVIVAVDSGSPSLSSNNSLVVKVGDTNDNPPVFGQSVVEVYFPENNIPGERVATVLAT
D
ADSGKNAEIAYSLDSSVMGTFAIDPDSGDILVNTVLDREQTDRYEFKVNAKDKGIPVLQGSTTVIVQVA
D
KNDNDPKFMQDVFTFYVKENLQPNSPVGMVTVMDADKGRNAEMSLYIEENSNIFSIENDTGTIYSTMSF
D
REHQTTYTFRVKAVDGGDPPRSATATVSLFVMDENDNAPTVTLPRNISYTLLPPSSNVRTVVATVLATD
S
DDGINADLNYSIVGGNPFKLFEIDSTSGVVSLVGKLTQKHYGLHRLVVQVNDSGQPSQSTTTLVHVFVN
E
SVSNATVIDSQIVRSLHTPLTQDIAGDPSYEISKQRLSIVIGVVAGIMTVILIILIVMMARYCRSKNKN
G
YEAGKKDHEDFFTPQQHDKSKKPKKDKKNKKSKQPLYSSIVTVEASKPNGQRYDSVNEKLSDSPSMGRY
R
SVNGGPGSPDLARHYKSSSPLPTVQLHPQSPTAGKKHQAVQDLPPANTFVGAGDNISIGSDHCSEYSCQ
T
SNKYSKQ
MRVHPYITVFG



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser