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Report for CCDS3275.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3275.1 Public Homo sapiens 3 CRYGS 24 110 108 CCDS HistoryNCBI Gene:1427Re-query CCDS DB by CCDS ID:3275.1Re-query CCDS DB by GeneID:1427See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3275.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000307944.6 ENSP00000312099.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000307944.6Link to Ensembl Protein Viewer:ENSP00000312099.5Re-query CCDS DB by Nucleotide ID:ENST00000307944Re-query CCDS DB by Protein ID:ENSP00000312099
Original member Current member EBI ENST00000392499.6 ENSP00000376287.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392499.6Link to Ensembl Protein Viewer:ENSP00000376287.2Re-query CCDS DB by Nucleotide ID:ENST00000392499Re-query CCDS DB by Protein ID:ENSP00000376287
Original member Current member NCBI NM_017541.4 NP_060011.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017541.4Link to Protein Sequence:NP_060011.1Re-query CCDS DB by Nucleotide ID:NM_017541Re-query CCDS DB by Protein ID:NP_060011Link to BLAST:NP_060011.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060011.1 178 P22914 178 100% 0 0

Chromosomal Locations for CCDS 3275.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 186538696 186538968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186539355 186539597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 186544306 186544326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (537 nt):
ATGTCTAAAACTGGAACCAAGATTACTTTCTATGAAGACAAAAATTTTCAAGGCCGTCGCTATGACTGTG
ATTGCGACTGTGCAGATTTCCACACATACCTAAGTCGCTGCAACTCCATTAAAGTGGAAGGAGGCACCTG
GGCTGTTTATGAAAGGCCCAACTTTGCTGGGTACATGTACATCTTACCACAGGGAGAGTACCCTGAATAC
CAGCGTTGGATGGGCCTCAACGACCGCCTCAGCTCCTGCAGAGCTGTTCATCTGCCTAGTGGAGGCCAGT
ATAAGATTCAGATCTTTGAGAAAGGGGATTTTAGTGGTCAGATGTATGAAACCACCGAAGATTGCCCTTC
CATCATGGAGCAATTTCACATGCGAGAGATCCACTCCTGTAAGGTGCTGGAGGGTGTCTGGATTTTCTAT
GAGCTACCCAACTACCGTGGCAGGCAGTACCTCCTGGACAAGAAGGAGTACCGGAAGCCCATCGATTGGG
GTGCAGCCTCCCCAGCTGTCCAGTCTTTCCGCCGCATTGTGGAGTAA

Translation (178 aa):
MSKTGTKITFYEDKNFQGRRYDCDCDCADFHTYLSRCNSIKVEGGTWAVYERPNFAGYMYILPQGEYPEY
QRWMGLNDRLSSCRAVHLPSGGQYKIQIFEKGDFSGQMYETTEDCPSIMEQFHMREIHSCKVLEGVWIFY
ELPNYRGRQYLLDKKEYRKPIDWGAASPAVQSFRRIVE


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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