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Report for CCDS19517.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19517.1 Public Mus musculus 5 Slc26a1 23 108 98 CCDS HistoryNCBI Gene:231583Re-query CCDS DB by CCDS ID:19517.1Re-query CCDS DB by GeneID:231583See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19517.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051757.13 ENSMUSP00000051561.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051757.13Link to Ensembl Protein Viewer:ENSMUSP00000051561.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000051757Re-query CCDS DB by Protein ID:ENSMUSP00000051561
Original member Current member EBI ENSMUST00000163328.7 ENSMUSP00000131282.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163328.7Link to Ensembl Protein Viewer:ENSMUSP00000131282.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163328Re-query CCDS DB by Protein ID:ENSMUSP00000131282
Original member Current member NCBI NM_001310692.1 NP_001297621.1 Accepted alive Link to Nucleotide Sequence:NM_001310692.1Link to Protein Sequence:NP_001297621.1Re-query CCDS DB by Nucleotide ID:NM_001310692Re-query CCDS DB by Protein ID:NP_001297621Link to BLAST:NP_001297621.1
Original member Current member NCBI NM_174870.4 NP_777359.3 Accepted alive Link to Nucleotide Sequence:NM_174870.4Link to Protein Sequence:NP_777359.3Re-query CCDS DB by Nucleotide ID:NM_174870Re-query CCDS DB by Protein ID:NP_777359Link to BLAST:NP_777359.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297621.1 704 P58735 704 100% 0 0
NP_777359.3 704 P58735 704 100% 0 0

Chromosomal Locations for CCDS 19517.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 108671217 108672740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 108673431 108674021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2115 nt):
ATGGATGCTTCTCCTGAGCCCCAACAGAAGGGTGGGACACTGGTACTGGTCCGACGGCAGCCCCCTGTGT
CCCAGGGCTTGCTGGAAACACTGAAGGCCAGGCTGAAGAAGAGCTGCACCTGCAGTATGCCATGTGCTCA
GGCTCTGGTGCAGGGTCTGTTTCCTGCCATACACTGGCTGCCCCAGTACCGCCTTAAGGAATACCTAGCA
GGTGATGTCATGTCAGGATTGGTCATTGGCATTATCCTGGTGCCACAGGCCATAGCCTACTCACTGCTGG
CTGGGTTACAACCCATCTATAGCCTCTACACTTCCTTCTTTGCCAACCTGATCTACTTCCTCATGGGCAC
CTCCCGCCATGTTAATGTGGGCATCTTCAGCCTGCTGTGTCTCATGGTGGGTCAGGTGGTGGACAGAGAA
CTCCAGTTGGCTGGCTTTGACCCTTCCCAGGATTCTCTAGGGCCCAAGAACAATGACAGCACCCTCAACA
ACTCAGCTACAACACTGATCATTGGGCTACAGGACTGCAGACGGGACTGCTATGCCATTCGGGTTGCCAC
TGCCCTTACTCTGATGGCCGGGCTTTATCAGGTCCTCATGGGTATCCTCCGGCTGGGCTTCGTGTCTACC
TATCTCTCACAACCACTGCTCGATGGCTTTGCTATGGGAGCTTCTGTGACCATCTTGACTTCTCAGGCAA
AACACATGCTGGGTGTGCAGATCCCTCGGCACCAGGGCCTAGGCATGGTGGTCCACACATGGTTGAGCTT
GCTGCAGAATGTGGGACAGGCCAACATATGTGATGTGGTCACCAGTGCCCTGTGCCTAGGAGTGCTGCTG
GCAGCTAAGGAACTCTCAGATCGCTACCGACACCGTCTGAAGGTGCCAATACCCACAGAGTTATTTGTTA
TTGTGGTGGCCACAATTGTGTCCCATTTTGGACAGCTCCATACACGGTTTGACTCGAGGGTGGCTGGCAA
CATTCCCACTGGTTTTGTGGCCCCACAGGTACCAGACCCTAAGATAATGTGGCGTGTGGCCCTGGATGCC
ATGTCCCTGGCCCTCGTGGGCTCAGCCTTCTCCATCTCCTTGGCAGAAATGTTTGCCCGTAGTCATGGCT
ACTCTGTCAGTGCCAACCAAGAGCTGCTAGCTGTGGGCTGCTGCAATGTGCTGCCTGCCTTCTTCCACTG
TTTTGCCACTAGTGCTGCTCTGTCCAAAACTCTGGTGAAGATAGCCACTGGCTGCCAGACCCAGTTGTCC
AGTGTGGTCAGTGCCGCTGTGGTGTTGCTGGTGCTGCTGGTGCTGGCTCCACTGTTTCATGATCTGCAGC
GATGTGTGCTAGCTTGTATCATTGTTGTCAGCCTGCGGGGGGCGCTGCGCAAGGTGAAGGATCTCCCACA
ACTTTGGCGGCTAAGCCCTGCCGATGCACTGGTCTGGGTGGCTACTGCAGCTACCTGTGTGCTAGTCAGC
ACCGAGGCTGGACTATTAGCTGGAGTGTTCTTCTCCCTGCTTAGCCTGGCAGGCCGTACACAGCGTCCAC
GGGCTGCCCTTCTTGCCCGAATTGGAGACTCCACCTTCTATGAGGATGCTGCTGAATTTGAGGGCCTCCT
GCCCCCACCTGAGGTGCGAGTGTTCCGTTTCACAGGTCCACTTTACTACGCCAACAAGGACTTCTTCCTT
CGGTCTCTCTACAGACTCACAGGGTTGGATGCAGGGCACTCAGCCACCAGGAAGGATCAGGGCCCGGAGG
TAGGTGTCAGTAACAGGAGTCTTGTCGATGGCAAGGATCTGGGTTCAGTGAGCAGTGGGGCTGGGCTGGT
GGTACCCCTGGCATTTGGTTTCCACACAGTGGTCATTGACTGTGCACCACTGCTGTTCCTGGATGTGGCT
GGCATGGCCACATTGAAAGACCTCCGCAGAGACTACAGGGCCTTGGACATCACCCTGCTTCTGGCTTGCT
GCAGTCCCTCGGTGAGAGACACGTTGAGAAAAGGGGGCTTCCTTGGGGAAGAACAGGGAGCTGAAAATGA
GCTGCTATTCCCCAGTGTGCACAGTGCTGTGGAGGCTGCATGTGCCCGCCGTGAGGAGCTGCTGGCTGCT
GACTCTGCCCTCTAG

Translation (704 aa):
MDASPEPQQKGGTLVLVRRQPPVSQGLLETLKARLKKSCTCSMPCAQALVQGLFPAIHWLPQYRLKEYLA
GDVMSGLVIGIILVPQAIAYSLLAGLQPIYSLYTSFFANLIYFLMGTSRHVNVGIFSLLCLMVGQVVDRE
LQLAGFDPSQDSLGPKNNDSTLNNSATTLIIGLQDCRRDCYAIRVATALTLMAGLYQVLMGILRLGFVST
YLSQPLLDGFAMGASVTILTSQAKHMLGVQIPRHQGLGMVVHTWLSLLQNVGQANICDVVTSALCLGVLL
AAKELSDRYRHRLKVPIPTELFVIVVATIVSHFGQLHTRFDSRVAGNIPTGFVAPQVPDPKIMWRVALDA
MSLALVGSAFSISLAEMFARSHGYSVSANQELLAVGCCNVLPAFFHCFATSAALSKTLVKIATGCQTQLS
SVVSAAVVLLVLLVLAPLFHDLQRCVLACIIVVSLRGALRKVKDLPQLWRLSPADALVWVATAATCVLVS
TEAGLLAGVFFSLLSLAGRTQRPRAALLARIGDSTFYEDAAEFEGLLPPPEVRVFRFTGPLYYANKDFFL
RSLYRLTGLDAGHSATRKDQGPEVGVSNRSLVDGKDLGSVSSGAGLVVPLAFGFHTVVIDCAPLLFLDVA
GMATLKDLRRDYRALDITLLLACCSPSVRDTLRKGGFLGEEQGAENELLFPSVHSAVEAACARREELLAA
DSAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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