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Report for CCDS53159.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53159.1 Public Mus musculus X Dmrtc1c2 23 108 98 CCDS HistoryNCBI Gene:668357Re-query CCDS DB by CCDS ID:53159.1Re-query CCDS DB by GeneID:668357See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53159.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087899.3 ENSMUSP00000085209.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087899.3Link to Ensembl Protein Viewer:ENSMUSP00000085209.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000087899Re-query CCDS DB by Protein ID:ENSMUSP00000085209
Original member Current member EBI ENSMUST00000120314.7 ENSMUSP00000113033.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120314.7Link to Ensembl Protein Viewer:ENSMUSP00000113033.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120314Re-query CCDS DB by Protein ID:ENSMUSP00000113033
Original member Current member NCBI NM_001142690.2 NP_001136162.1 Accepted alive Link to Nucleotide Sequence:NM_001142690.2Link to Protein Sequence:NP_001136162.1Re-query CCDS DB by Nucleotide ID:NM_001142690Re-query CCDS DB by Protein ID:NP_001136162Link to BLAST:NP_001136162.1

Chromosomal Locations for CCDS 53159.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 102850319 102850444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102850632 102850695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102851572 102851708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102852030 102852088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102852411 102852562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102852706 102852879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102854134 102854138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (717 nt):
ATGAGCCTAAGAACCATGGGACCAAAAGACAAAGCAGCTGTTTCCTGCCGGCCCTCCACCTCGGAATGTA
ACATGGGGAACAAGACTGGAGCAGCAGCACCTGTAATGGAACCTATCCTCAGAGGACGTGCAAATCACCC
TGGCAGAGGCCACAGTTGTGGCACCCGGACCCAAGTCAGGGACCACGGCGAGGCCCTGCTGGCTGTGGGT
TCTGAGCAAAAGGGGTATAGTGCACGAGGAAAGAGACGCCAGATTCGACTACCAAGAACGACTCTCCCCC
GCAAACCCTTCGATCAGGCCAAGAAGACCCCTACCAAAGGAAGAGGTCGCCCTGCAAAGGAGAACCCTGT
GTCCCAGCCTGAAGACCTGCCTCAAGCAAGCCCCCAGGAGGAGAGCCCCCACGGGTCTCAAGTGTATTGC
TGGCCCCCAGCACTTTCACCTCTGCCTTACATGTCAGTGCCCCCAGAGCAGCAGTTGGTGGCTCCTCCTT
CCACGGAGATTCACGGGGCTTTTGCTGAGTCCAACCCATGCTCAAGTATGGTCCTCCTGCCACGTACCTC
CACCGATCACCACCATCCACTGGAGTCACAGGGCTCCGGTGCCTCTGACCAGGCCTCGGTTCCTGCCTCC
TTAGAGTGTCAGGAAATACTGGAGGCTGCTGAGGCCCTGATGACTCTGAAGAACTCTTCTTGGACCTGGC
ACCAGACCCACAGCTAA

Translation (238 aa):
MSLRTMGPKDKAAVSCRPSTSECNMGNKTGAAAPVMEPILRGRANHPGRGHSCGTRTQVRDHGEALLAVG
SEQKGYSARGKRRQIRLPRTTLPRKPFDQAKKTPTKGRGRPAKENPVSQPEDLPQASPQEESPHGSQVYC
WPPALSPLPYMSVPPEQQLVAPPSTEIHGAFAESNPCSSMVLLPRTSTDHHHPLESQGSGASDQASVPAS
LECQEILEAAEALMTLKNSSWTWHQTHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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