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Report for CCDS81161.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81161.1 Public Mus musculus X Dmrtc1c2 23 108 98 CCDS HistoryNCBI Gene:668357Re-query CCDS DB by CCDS ID:81161.1Re-query CCDS DB by GeneID:668357See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81161.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000087896.10 ENSMUSP00000085206.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000087896.10Link to Ensembl Protein Viewer:ENSMUSP00000085206.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000087896Re-query CCDS DB by Protein ID:ENSMUSP00000085206
Original member Current member NCBI NM_001310684.1 NP_001297613.1 Accepted alive Link to Nucleotide Sequence:NM_001310684.1Link to Protein Sequence:NP_001297613.1Re-query CCDS DB by Nucleotide ID:NM_001310684Re-query CCDS DB by Protein ID:NP_001297613Link to BLAST:NP_001297613.1

Chromosomal Locations for CCDS 81161.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 102850319 102850444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102850632 102850695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102851572 102851708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102852030 102852088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102852411 102852562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 102852706 102852869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (702 nt):
ATGGGACCAAAAGACAAAGCAGCTGTTTCCTGCCGGCCCTCCACCTCGGAATGTAACATGGGGAACAAGA
CTGGAGCAGCAGCACCTGTAATGGAACCTATCCTCAGAGGACGTGCAAATCACCCTGGCAGAGGCCACAG
TTGTGGCACCCGGACCCAAGTCAGGGACCACGGCGAGGCCCTGCTGGCTGTGGGTTCTGAGCAAAAGGGG
TATAGTGCACGAGGAAAGAGACGCCAGATTCGACTACCAAGAACGACTCTCCCCCGCAAACCCTTCGATC
AGGCCAAGAAGACCCCTACCAAAGGAAGAGGTCGCCCTGCAAAGGAGAACCCTGTGTCCCAGCCTGAAGA
CCTGCCTCAAGCAAGCCCCCAGGAGGAGAGCCCCCACGGGTCTCAAGTGTATTGCTGGCCCCCAGCACTT
TCACCTCTGCCTTACATGTCAGTGCCCCCAGAGCAGCAGTTGGTGGCTCCTCCTTCCACGGAGATTCACG
GGGCTTTTGCTGAGTCCAACCCATGCTCAAGTATGGTCCTCCTGCCACGTACCTCCACCGATCACCACCA
TCCACTGGAGTCACAGGGCTCCGGTGCCTCTGACCAGGCCTCGGTTCCTGCCTCCTTAGAGTGTCAGGAA
ATACTGGAGGCTGCTGAGGCCCTGATGACTCTGAAGAACTCTTCTTGGACCTGGCACCAGACCCACAGCT
AA

Translation (233 aa):
MGPKDKAAVSCRPSTSECNMGNKTGAAAPVMEPILRGRANHPGRGHSCGTRTQVRDHGEALLAVGSEQKG
YSARGKRRQIRLPRTTLPRKPFDQAKKTPTKGRGRPAKENPVSQPEDLPQASPQEESPHGSQVYCWPPAL
SPLPYMSVPPEQQLVAPPSTEIHGAFAESNPCSSMVLLPRTSTDHHHPLESQGSGASDQASVPASLECQE
ILEAAEALMTLKNSSWTWHQTHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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