NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS51123.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51123.1 Public Mus musculus 4 Cibar1 23 108 98 CCDS HistoryNCBI Gene:68099Re-query CCDS DB by CCDS ID:51123.1Re-query CCDS DB by GeneID:68099See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51123.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108285.8 ENSMUSP00000103920.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108285.8Link to Ensembl Protein Viewer:ENSMUSP00000103920.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108285Re-query CCDS DB by Protein ID:ENSMUSP00000103920
Original member Current member NCBI NM_026558.5 NP_080834.3 Accepted alive Link to Nucleotide Sequence:NM_026558.5Link to Protein Sequence:NP_080834.3Re-query CCDS DB by Nucleotide ID:NM_026558Re-query CCDS DB by Protein ID:NP_080834Link to BLAST:NP_080834.3

Chromosomal Locations for CCDS 51123.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 12153895 12153978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 12155649 12155768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 12157651 12157764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 12164088 12164192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 12165766 12165771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 12168223 12168324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 12168965 12169033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 12170984 12171218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 12171698 12171930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1068 nt):
ATGCCCTCTGGTCTCCCTTGCCCTGCTCTTGACCGCCGGGGCGCGCGCCGCGTCGCCACGGAAACGCCGG
GCAGGCGGGGCGGCGCGCACTGCGCGCTCTCAGCTCCCGGTAGAAGTGGCGGCGTCGCCTGCTCCCGCGC
GCCCTGGCGGCCCGGAGCCGCGCTCGTTGGGCTCCCATCCTGGGTCCCGGGCGGCGGGAAAGGCAAGATG
TTGAGGCGCAATCTGGATGAGCGAGATGCTCAAACAAAACAACTGCAGGATGCTGTCACAAATGTGGAGA
AGCATTTTGGAGAGCTTTGCCAAATCTTTGCTGCTTATGTACGGAAAACTGCCAGGCTTCGAGACAAAGC
CGACCTCCTAGTGAACGAAATCAACCTGTATGCCTCTACCGAGACACCAAATTTAAAGCAGGGTCTGAAA
GACTTTGCTGATGAGTTTGCCAAACTTCAAGATTATCGCCAGGCAGAGGTTGAAAGACTTGAAGCCAAAG
TAGTTGAACCTTTGAAAGCTTATGGGACCATTGTAAAGATGAAGCGAGATGATCTCAAAGCAACATTAAC
AGCAAGGAATCGAGAAGCCAAACAGCTATCTCAGTTAGAAAGGACACGCCAGCGAAACCCATCTGATCGA
CATGTAATTTCGCAGGCAGAAACTGAATTACAGAGAGCCACGATTGATGCTACCCGCACAAGTCGTCATT
TGGAGGAAACTATTGACAATTTTGAAAAGCAGAAAATAAAGGACATAAAGAACATATTATCTGAGTTCAT
CACAATTGAAATGTTATTTCATGGAAAAGCCTTAGAGGTCTTCACTGCTGCCTACCAAAATATACAAAAC
ATTGATGAGGATGAAGACCTAGAGGTTTTCCGAAATTCTCTGTATCTATCAGATTATCCATCTCGCTTAG
ATATTGTAAGAGCAAATTCAAAGTCACCTCTTCAGAGATCATTGTCAACTAAGTGCACATCTGGAACTGG
ACAGATATCCACCTGCCGAACAAGGAAGGACCAACAAGTAGAAGATGAAGATGATGAAGAATTAGATGTT
ACAGAAGATGAAAACTAA

Translation (355 aa):
MPSGLPCPALDRRGARRVATETPGRRGGAHCALSAPGRSGGVACSRAPWRPGAALVGLPSWVPGGGKGKM
LRRNLDERDAQTKQLQDAVTNVEKHFGELCQIFAAYVRKTARLRDKADLLVNEINLYASTETPNLKQGLK
DFADEFAKLQDYRQAEVERLEAKVVEPLKAYGTIVKMKRDDLKATLTARNREAKQLSQLERTRQRNPSDR
HVISQAETELQRATIDATRTSRHLEETIDNFEKQKIKDIKNILSEFITIEMLFHGKALEVFTAAYQNIQN
IDEDEDLEVFRNSLYLSDYPSRLDIVRANSKSPLQRSLSTKCTSGTGQISTCRTRKDQQVEDEDDEELDV
TEDEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH