NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS7910.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7910.1 Public Homo sapiens 11 TSPAN18 24 110 108 CCDS HistoryNCBI Gene:90139Re-query CCDS DB by CCDS ID:7910.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7910.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340160.7 ENSP00000339820.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000340160.7Link to Ensembl Protein Viewer:ENSP00000339820.3Re-query CCDS DB by Nucleotide ID:ENST00000340160Re-query CCDS DB by Protein ID:ENSP00000339820
Original member Current member EBI ENST00000520358.7 ENSP00000429993.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000520358.7Link to Ensembl Protein Viewer:ENSP00000429993.2Re-query CCDS DB by Nucleotide ID:ENST00000520358Re-query CCDS DB by Protein ID:ENSP00000429993
Original member Current member NCBI NM_130783.5 NP_570139.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_130783.5Link to Protein Sequence:NP_570139.3Re-query CCDS DB by Nucleotide ID:NM_130783Re-query CCDS DB by Protein ID:NP_570139Link to BLAST:NP_570139.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_570139.3 248 Q96SJ8 248 100% 0 0

Chromosomal Locations for CCDS 7910.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 44906417 44906479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 44909705 44909899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 44917972 44918046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 44919214 44919312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 44919817 44919999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 44926674 44926757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 44929131 44929178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (747 nt):
ATGGAAGGCGACTGTCTGAGCTGCATGAAGTATCTGATGTTTGTATTCAATTTCTTCATATTTCTGGGCG
GGGCCTGCCTGCTGGCCATCGGCATCTGGGTCATGGTGGACCCCACCGGCTTCCGGGAGATCGTGGCTGC
CAATCCTCTGCTCCTCACGGGCGCCTACATCCTCCTGGCCATGGGGGGCCTGCTCTTTCTGCTCGGCTTC
CTGGGCTGCTGCGGGGCCGTCCGTGAGAACAAGTGTCTGCTGCTATTTTTCTTCCTGTTCATCCTGATCA
TCTTCCTGGCAGAGCTCTCAGCAGCCATCCTGGCCTTCATCTTCAGGGAAAATCTCACCCGAGAATTCTT
CACCAAGGAGCTCACCAAGCACTACCAGGGCAATAACGACACAGACGTCTTCTCTGCCACCTGGAACTCG
GTCATGATCACATTTGGTTGCTGCGGGGTCAACGGGCCTGAAGACTTTAAGTTTGCATCTGTGTTTCGAC
TCCTGACCCTGGATAGTGAAGAGGTGCCGGAGGCCTGCTGCCGGAGGGAACCCCAAAGTCGGGACGGGGT
CCTGCTGAGCCGGGAGGAGTGCCTCCTGGGAAGGAGCCTATTCCTAAACAAGCAGGGCTGTTACACGGTG
ATCCTCAACACCTTCGAGACCTACGTCTACTTGGCCGGAGCCCTTGCCATCGGGGTACTGGCCATCGAGC
TTTTCGCCATGATCTTTGCCATGTGCCTCTTCCGGGGCATCCAGTAG

Translation (248 aa):
MEGDCLSCMKYLMFVFNFFIFLGGACLLAIGIWVMVDPTGFREIVAANPLLLTGAYILLAMGGLLFLLGF
LGCCGAVRENKCLLLFFFLFILIIFLAELSAAILAFIFRENLTREFFTKELTKHYQGNNDTDVFSATWNS
VMITFGCCGVNGPEDFKFASVFRLLTLDSEEVPEACCRREPQSRDGVLLSREECLLGRSLFLNKQGCYTV
ILNTFETYVYLAGALAIGVLAIELFAMIFAMCLFRGIQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH