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Report for CCDS11756.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11756.1 Public Homo sapiens 17 SOCS3 24 110 108 CCDS HistoryNCBI Gene:9021Re-query CCDS DB by CCDS ID:11756.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11756.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000330871.3 ENSP00000330341.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000330871.3Link to Ensembl Protein Viewer:ENSP00000330341.2Re-query CCDS DB by Nucleotide ID:ENST00000330871Re-query CCDS DB by Protein ID:ENSP00000330341
Original member Current member NCBI NM_001378932.1 NP_001365861.1 Accepted alive Link to Nucleotide Sequence:NM_001378932.1Link to Protein Sequence:NP_001365861.1Re-query CCDS DB by Nucleotide ID:NM_001378932Re-query CCDS DB by Protein ID:NP_001365861Link to BLAST:NP_001365861.1
Original member Current member NCBI NM_001378933.1 NP_001365862.1 Accepted alive Link to Nucleotide Sequence:NM_001378933.1Link to Protein Sequence:NP_001365862.1Re-query CCDS DB by Nucleotide ID:NM_001378933Re-query CCDS DB by Protein ID:NP_001365862Link to BLAST:NP_001365862.1
Original member Current member NCBI NM_003955.5 NP_003946.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003955.5Link to Protein Sequence:NP_003946.3Re-query CCDS DB by Nucleotide ID:NM_003955Re-query CCDS DB by Protein ID:NP_003946Link to BLAST:NP_003946.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001365861.1 225 O14543 225 100% 0 0
NP_001365862.1 225 O14543 225 100% 0 0
NP_003946.3 225 O14543 225 100% 0 0

Chromosomal Locations for CCDS 11756.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 78358418 78359095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (678 nt):
ATGGTCACCCACAGCAAGTTTCCCGCCGCCGGGATGAGCCGCCCCCTGGACACCAGCCTGCGCCTCAAGA
CCTTCAGCTCCAAGAGCGAGTACCAGCTGGTGGTGAACGCAGTGCGCAAGCTGCAGGAGAGCGGCTTCTA
CTGGAGCGCAGTGACCGGCGGCGAGGCGAACCTGCTGCTCAGTGCCGAGCCCGCCGGCACCTTTCTGATC
CGCGACAGCTCGGACCAGCGCCACTTCTTCACGCTCAGCGTCAAGACCCAGTCTGGGACCAAGAACCTGC
GCATCCAGTGTGAGGGGGGCAGCTTCTCTCTGCAGAGCGATCCCCGGAGCACGCAGCCCGTGCCCCGCTT
CGACTGCGTGCTCAAGCTGGTGCACCACTACATGCCGCCCCCTGGAGCCCCCTCCTTCCCCTCGCCACCT
ACTGAACCCTCCTCCGAGGTGCCCGAGCAGCCGTCTGCCCAGCCACTCCCTGGGAGTCCCCCCAGAAGAG
CCTATTACATCTACTCCGGGGGCGAGAAGATCCCCCTGGTGTTGAGCCGGCCCCTCTCCTCCAACGTGGC
CACTCTTCAGCATCTCTGTCGGAAGACCGTCAACGGCCACCTGGACTCCTATGAGAAAGTCACCCAGCTG
CCGGGGCCCATTCGGGAGTTCCTGGACCAGTACGATGCCCCGCTTTAA

Translation (225 aa):
MVTHSKFPAAGMSRPLDTSLRLKTFSSKSEYQLVVNAVRKLQESGFYWSAVTGGEANLLLSAEPAGTFLI
RDSSDQRHFFTLSVKTQSGTKNLRIQCEGGSFSLQSDPRSTQPVPRFDCVLKLVHHYMPPPGAPSFPSPP
TEPSSEVPEQPSAQPLPGSPPRRAYYIYSGGEKIPLVLSRPLSSNVATLQHLCRKTVNGHLDSYEKVTQL
PGPIREFLDQYDAPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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