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Report for CCDS12959.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12959.2 Public Homo sapiens 19 ZNF551 24 110 108 CCDS HistoryNCBI Gene:90233Re-query CCDS DB by CCDS ID:12959.2See the combined annotation on chromosome 19 in Sequence Viewer

Public Note for CCDS 12959.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript data and by conservation in primates.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 12959.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000282296.10 ENSP00000282296.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000282296.10Link to Ensembl Protein Viewer:ENSP00000282296.5Re-query CCDS DB by Nucleotide ID:ENST00000282296Re-query CCDS DB by Protein ID:ENSP00000282296
Original member Current member NCBI NM_138347.5 NP_612356.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138347.5Link to Protein Sequence:NP_612356.2Re-query CCDS DB by Nucleotide ID:NM_138347Re-query CCDS DB by Protein ID:NP_612356Link to BLAST:NP_612356.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612356.2 670 Q7Z340-1 670 100% 0 0

Chromosomal Locations for CCDS 12959.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 57682164 57682244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57685262 57685385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57686481 57688288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2013 nt):
ATGCCCGCCCCGGTCGGCCGCCGCTCCCCGCCTAGTCCACGGAGCTCAATGGCGGCAGTCGCGCTGAGGG
ACTCGGCTCAGGGTATGACCTTTGAGGATGTGGCCATTTATTTCTCCCAAGAAGAGTGGGAGCTCCTTGA
TGAGTCTCAGAGGTTCCTGTACTGCGATGTGATGCTGGAGAACTTTGCACATGTAACATCCCTGGGTTAT
TGCCATGGAATGGAGAATGAGGCGATAGCTTCTGAGCAGAGTGTATCTATACAGGTCAGGACTTCTAAGG
GCAATACACCCACCCAGAAAACTCACCTCAGTGAGATTAAGATGTGTGTCCCAGTCTTGAAAGACATTTT
GCCTGCGGCTGAGCACCAAACCACATCCCCTGTGCAAAAGTCATACTTGGGTAGCACAAGCATGAGAGGC
TTCTGCTTCAGTGCTGACCTTCACCAGCATCAAAAGCATTACAATGAAGAAGAGCCCTGGAAAAGGAAGG
TGGATGAGGCTACATTTGTGACCGGCTGCAGATTCCATGTGTTGAATTATTTCACCTGTGGGGAGGCCTT
CCCAGCCCCCACGGACCTACTCCAACACGAAGCCACTCCCAGTGGTGAGGAGCCACACAGTAGCAGCAGC
AAGCATATACAGGCATTTTTCAATGCAAAAAGTTATTACAAGTGGGGTGAATACAGAAAAGCTTCAAGCC
ACAAACACACACTTGTTCAGCATCAGAGTGTCTGTTCTGAAGGAGGGCTTTATGAGTGTAGCAAATGTGA
GAAAGCCTTCACTTGCAAGAACACACTTGTTCAGCACCAGCAAATTCACACTGGACAAAAGATGTTTGAG
TGTAGTGAATGTGAGGAATCCTTTAGCAAAAAGTGCCACCTAATCTTACACAAGATAATTCACACTGGAG
AAAGGCCTTATGAATGCAGTGATCGTGAGAAAGCCTTTATCCATAAATCTGAATTCATTCACCACCAGAG
ACGTCACACTGGAGGAGTGCGTCATGAGTGTGGTGAATGTAGGAAAACCTTTAGCTACAAATCTAACCTC
ATTGAACACCAGAGAGTTCACACTGGAGAAAGGCCTTATGAATGTGGCGAGTGCGGGAAATCCTTTAGAC
AAAGCTCTAGCCTTTTTCGACACCAGAGAGTTCACTCTGGAGAAAGGCCTTATCAGTGCTGTGAGTGTGG
GAAATCCTTTAGACAAATCTTCAATCTCATTCGACATAGAAGAGTTCACACTGGAGAAATGCCTTATCAG
TGCAGTGATTGTGGGAAATCTTTTAGCTGCAAATCGGAACTCATTCAACACCAGAGAATTCACAGTGGAG
AAAGACCTTATGAATGCAGAGAATGTGGGAAATCCTTTAGACAATTCTCTAACCTCATTCGACACCGCAG
CATTCACACTGGTGATAGGCCTTATGAGTGCAGTGAATGTGAGAAATCCTTTAGCCGCAAATTTATCCTG
ATTCAACACCAAAGAGTTCACACTGGAGAAAGACCTTATGAATGCAGTGAATGTGGAAAATCCTTTACCC
GCAAATCTGACCTCATTCAACACCGGAGAATTCATACTGGCACAAGACCTTATGAGTGCAGTGAATGTGG
CAAATCTTTTAGACAGCGCTCTGGCCTCATTCAGCACCGGAGACTTCATACTGGAGAAAGGCCTTATGAA
TGTAGTGAATGTGGAAAGTCTTTTAGCCAAAGTGCTAGCCTCATTCAACACCAGAGAGTTCACACTGGAG
AAAGGCCTTATGAATGTAGTGAATGTGGGAAATCCTTTAGCCAGAGCTCTAGCCTCATTCAACACCAGAG
AGGTCACACTGGAGAAAGACCTTATGAGTGCAGTCAATGTGGGAAACCCTTTACCCACAAATCAGACCTT
ATTCAGCACCAAAGAGTTCACACTGGAGAAAGGCCTTATGAATGCAGTGAATGTGGGAAATCCTTTAGCC
GCAAATCTAACCTCATTCGACATCGGAGAGTTCACACTGAAGAAAGGCCTTAA

Translation (670 aa):
MPAPVGRRSPPSPRSSMAAVALRDSAQGMTFEDVAIYFSQEEWELLDESQRFLYCDVMLENFAHVTSLGY
CHGMENEAIASEQSVSIQVRTSKGNTPTQKTHLSEIKMCVPVLKDILPAAEHQTTSPVQKSYLGSTSMRG
FCFSADLHQHQKHYNEEEPWKRKVDEATFVTGCRFHVLNYFTCGEAFPAPTDLLQHEATPSGEEPHSSSS
KHIQAFFNAKSYYKWGEYRKASSHKHTLVQHQSVCSEGGLYECSKCEKAFTCKNTLVQHQQIHTGQKMFE
CSECEESFSKKCHLILHKIIHTGERPYECSDREKAFIHKSEFIHHQRRHTGGVRHECGECRKTFSYKSNL
IEHQRVHTGERPYECGECGKSFRQSSSLFRHQRVHSGERPYQCCECGKSFRQIFNLIRHRRVHTGEMPYQ
CSDCGKSFSCKSELIQHQRIHSGERPYECRECGKSFRQFSNLIRHRSIHTGDRPYECSECEKSFSRKFIL
IQHQRVHTGERPYECSECGKSFTRKSDLIQHRRIHTGTRPYECSECGKSFRQRSGLIQHRRLHTGERPYE
CSECGKSFSQSASLIQHQRVHTGERPYECSECGKSFSQSSSLIQHQRGHTGERPYECSQCGKPFTHKSDL
IQHQRVHTGERPYECSECGKSFSRKSNLIRHRRVHTEERP


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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