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Report for CCDS80508.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80508.1 Public Mus musculus 6 Zc3hc1 23 108 98 CCDS HistoryNCBI Gene:232679Re-query CCDS DB by CCDS ID:80508.1Re-query CCDS DB by GeneID:232679See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80508.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080812.13 ENSMUSP00000079627.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080812.13Link to Ensembl Protein Viewer:ENSMUSP00000079627.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000080812Re-query CCDS DB by Protein ID:ENSMUSP00000079627
Original member Current member NCBI NM_001311086.1 NP_001298015.1 Accepted alive Link to Nucleotide Sequence:NM_001311086.1Link to Protein Sequence:NP_001298015.1Re-query CCDS DB by Nucleotide ID:NM_001311086Re-query CCDS DB by Protein ID:NP_001298015Link to BLAST:NP_001298015.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001298015.1 501 Q80YV2-1 501 100% 0 0

Chromosomal Locations for CCDS 80508.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 30366677 30366745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30370265 30370471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30372738 30372950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30373243 30373483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30374765 30374919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30375939 30376066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30381781 30381864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30382537 30382687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30387421 30387532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30390857 30391002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGGCGGCTACCAGTGAGGGGCCGCTGTTTGCTGCGAGTATTGAAAAGACTTGGGGTTCAGTCGTTCGTT
CCCCTGAAGGGACACCCCAGAAAGTTCGGGAGCTGATAGATGAAGGAATTGTCCCGGAAGAGGGAGGCAC
AGAACCAAAGGACACAGCTGCCACATTCCAGTCAGTTGATGGATCGCCTCAAGCAGAACAGTCTCCATTG
GAATCCACAAGCAAAGAAGCCTTCTTTCACAGAGTGGAAACCTTTTCTTCTTTGAAGTGGGCAGGGAAGC
CCCCTGAGCTGTCTCCACTTATCTGCGCTAAATATGGTTGGGTCACAGTTGAATGTGACATGCTCAAGTG
CTCCAGCTGCCAGGCTTTCCTCTGTGCCAGCCTGCAGCCCACGTTTGACTTTGGCAGATATAAGGAGCGA
TGTGCTGAGCTCAAGAAATCCTTGTGCAGTGCCCATGAGAAGTTCTGTTTTTGGCCAGACAGCCCCTCTC
CAGATAGATTTGGGATGTTGCCATTGGGTGAGCCTGCTGTTCTCATCAGTGAGTTCCTGGACCGGTTTCA
AAGCCTTTGCCATTTGGACCTCCAACTTCCTTCTCTGAGGCCAGAGGACTTGAAAACTATGTGCTTGACA
GAAGACGCGGTCAGTGCCCTGCTGCACCTGCTGGAGGATGAGCTTGATTTCCACGCCGATGACAGGAAAA
CTACAAGCAAGTTAGGCTCCGACGTCCAAGTCCAAGCCACTGCGTGTGTTCTCTCTCTGTGCGGCTGGGC
GTGTAGTTCCTTGGAACCTACTCAGCTCTCCCTGATAACATGTTACCAGTGTATGAGGAAGGTCGGTCTC
TGGGGCTTTCAGCAGATTGAATCATCCATGACAGATCTGGAGGCTTCCTTTGGCCTGACCAGCTCCCCGA
TTCCAGGTGTGGAGGGCCGGCCTGAACACTTCCCTCTGGTGCCTGAATCCCCTAGGCGGATGATGACCCG
AAGCCAGGATGCTACAGTTTCTCCAGGCTCTGAGCAGTCTGAAAAAAGTCCTGGTCCTATTGTTTCCCGA
ACCCGGAGTTGGGAGTCTTCCAGTCCTGTTGACCGGCCTGAGCTAGAGGCAGCCAGTCCTACTACCAGGA
GCCGCCCAGTGACCCGAAGCATGGGAACAGGAGATTCTGCTGGCGTGGAAGTTCCCTCGAGCCCTCTCCG
GAGAACCAAGCGAGCTCGCCTCTGCTCTTCCAGCAGCTCTGACACCTCTCCCCGAAGCTTCTTTGATCCC
ACCTCTCAGCATAGAGATTGGTGCCCGTGGGTGAATATCACACTCGTCAAAGAAACCAAGGAGAATGGGG
AAACAGAAGTGGATGCCTGTACCCCAGCAGAGCCAGGTTGGAAGGCAGTGTTGACCATCCTGTTGGCCCA
CAAGCGTTCTAACCAGCCAGCTGAGACAGACTCCATGAGTCTCTCTGAAAAATCAAGGAAAGTGTTCCGA
ATATTCCGGCAGTGGGAGTCTTCATCCTCATCGTGA

Translation (501 aa):
MAATSEGPLFAASIEKTWGSVVRSPEGTPQKVRELIDEGIVPEEGGTEPKDTAATFQSVDGSPQAEQSPL
ESTSKEAFFHRVETFSSLKWAGKPPELSPLICAKYGWVTVECDMLKCSSCQAFLCASLQPTFDFGRYKER
CAELKKSLCSAHEKFCFWPDSPSPDRFGMLPLGEPAVLISEFLDRFQSLCHLDLQLPSLRPEDLKTMCLT
EDAVSALLHLLEDELDFHADDRKTTSKLGSDVQVQATACVLSLCGWACSSLEPTQLSLITCYQCMRKVGL
WGFQQIESSMTDLEASFGLTSSPIPGVEGRPEHFPLVPESPRRMMTRSQDATVSPGSEQSEKSPGPIVSR
TRSWESSSPVDRPELEAASPTTRSRPVTRSMGTGDSAGVEVPSSPLRRTKRARLCSSSSSDTSPRSFFDP
TSQHRDWCPWVNITLVKETKENGETEVDACTPAEPGWKAVLTILLAHKRSNQPAETDSMSLSEKSRKVFR
IFRQWESSSSS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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