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Report for CCDS78695.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78695.1 Public Mus musculus 1 Nek7 23 108 98 CCDS HistoryNCBI Gene:59125Re-query CCDS DB by CCDS ID:78695.1Re-query CCDS DB by GeneID:59125See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78695.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027642.4 ENSMUSP00000027642.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027642.4Link to Ensembl Protein Viewer:ENSMUSP00000027642.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000027642Re-query CCDS DB by Protein ID:ENSMUSP00000027642
Original member NCBI NM_001311148.1 NP_001298077.1 Updated not alive Link to Nucleotide Sequence:NM_001311148.1Link to Protein Sequence:NP_001298077.1Re-query CCDS DB by Nucleotide ID:NM_001311148Re-query CCDS DB by Protein ID:NP_001298077
Current member NCBI NM_001311148.2 NP_001298077.1 Accepted alive Link to Nucleotide Sequence:NM_001311148.2Link to Protein Sequence:NP_001298077.1Re-query CCDS DB by Nucleotide ID:NM_001311148Re-query CCDS DB by Protein ID:NP_001298077Link to BLAST:NP_001298077.1

Chromosomal Locations for CCDS 78695.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 138487094 138487110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138515625 138515732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138516528 138516636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138532737 138532847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138534364 138534426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138544203 138544343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 138561703 138561759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (606 nt):
ATGGATGAACAATCACAAGGAATGCAAGGGCCGCCCGTTACTCAGTTCCAGCCACAGAAGGCATTACGGC
CAGATATGGGCTATAATACTTTAGCCAACTTCCGAATAGAAAAGAAAATTGGTCGTGGACAATTTAGTGA
AGTTTATAGAGCATCCTGTCTCTTGGATGGAGTGCCGGTAGCGTTAAAAAAAGTACAGATATTTGATTTA
ATGGATGCCAAAGCACGTGCTGATTGTATCAAAGAAATAGACCTCCTTAAGCAACTCAACCATCCAAATG
TAATTAAATACTATGCATCATTCATTGAGGATAATGAGCTGAACATAGTTTTGGAGTTAGCAGATGCTGG
TGACCTCTCCAGAATGATAAAGCACTTTAAGAAACAAAAGAGGCTAATCCCTGAGAGAACCGTTTGGAAA
TACTTCGTTCAGCTCTGCAGTGCACTGGACCACATGCATTCTCGAAGAGTCATGCACAGAGATATAAAAC
CAGCTAATGTGTTCATTACAGCCACTGGGGTAGTAAAACTCGGAGACCTTGGGCTTGGTCGGTTTTTCAG
CTCCAAAACCACAGCTGCACATTCTTTAGCTACGACAGCTAGTTAA

Translation (201 aa):
MDEQSQGMQGPPVTQFQPQKALRPDMGYNTLANFRIEKKIGRGQFSEVYRASCLLDGVPVALKKVQIFDL
MDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWK
YFVQLCSALDHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLATTAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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