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Report for CCDS12824.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12824.1 Public Homo sapiens 19 CTU1 24 110 108 CCDS HistoryNCBI Gene:90353Re-query CCDS DB by CCDS ID:12824.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12824.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000421832.3 ENSP00000390011.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000421832.3Link to Ensembl Protein Viewer:ENSP00000390011.1Re-query CCDS DB by Nucleotide ID:ENST00000421832Re-query CCDS DB by Protein ID:ENSP00000390011
Original member Current member NCBI NM_145232.4 NP_660275.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145232.4Link to Protein Sequence:NP_660275.2Re-query CCDS DB by Nucleotide ID:NM_145232Re-query CCDS DB by Protein ID:NP_660275Link to BLAST:NP_660275.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660275.2 348 Q7Z7A3 348 100% 0 0

Chromosomal Locations for CCDS 12824.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 51098601 51099139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 51104062 51104569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1047 nt):
ATGCCCGCCCCGCCGTGCGCCTCCTGCCATGCTGCACGCGCCGCCCTCCGCCGTCCGCTCTCGGGCCAAG
CGCTGTGCGGTGCCTGCTTCTGCGCCGCCTTCGAGGCCGAGGTGCTGCACACGGTGCTCGCCGGCCGCCT
GCTGCCGCCCGGCGCGGTGGTGGCCGTGGGCGCCTCGGGCGGCAAGGACTCCACGGTGCTGGCGCACGTG
CTGCGCGCGCTGGCGCCGCGCCTGGGCATCTCACTGCAGCTCGTGGCCGTCGATGAGGGCATCGGTGGCT
ACCGGGACGCGGCGTTGGCGGCCGTGCGGCGCCAGGCGGCGCGCTGGGAGCTGCCGCTCACGGTCGTGGC
CTACGAAGACCTCTTTGGGGGCTGGACGATGGACGCCGTGGCCCGCAGCACAGCCGGCTCCGGCCGCAGC
CGCTCCTGCTGCACCTTCTGTGGAGTGCTGCGGCGCCGGGCGCTGGAGGAAGGGGCGCGCCGCGTGGGAG
CCACGCACATCGTGACAGGTCACAACGCCGACGACATGGCGGAGACCGTGCTCATGAACTTCCTACGGGG
CGACGCGGGGCGGCTGGCCCGGGGCGGGGGCCTGGGCTCTCCCGGCGAGGGGGGCGCCCTGCCGCGCTGC
CGCCCGCTGCAGTTCGCCTCGCAGAAGGAGGTGGTGCTGTACGCGCACTTCCGCCGCCTCGACTACTTCT
CCGAGGAGTGCGTCTACGCGCCCGAGGCCTTCCGCGGCCACGCCCGGGACCTGCTCAAGCGCCTGGAGGC
GGCGCGGCCGTCCGCGGTGCTGGACCTCGTGCACTCGGCCGAGCGCCTGGCGCTGGCCCCGGCCGCGCGG
CCCCCGCGCCCCGGCGCCTGCTCCCGCTGTGGGGCGCTGGCCAGCCGCGCGCTCTGCCAGGCCTGCGCGC
TCCTGGACGGCCTGAACCGCGGCCGGCCCCGCCTGGCCATCGGCAAGGGCCGCCGGGGTCTGGACGAGGA
GGCGACGCCGGGGACGCCCGGGGATCCGGCCCGGCCCCCCGCCTCCAAGGCCGTCCCCACCTTCTAG

Translation (348 aa):
MPAPPCASCHAARAALRRPLSGQALCGACFCAAFEAEVLHTVLAGRLLPPGAVVAVGASGGKDSTVLAHV
LRALAPRLGISLQLVAVDEGIGGYRDAALAAVRRQAARWELPLTVVAYEDLFGGWTMDAVARSTAGSGRS
RSCCTFCGVLRRRALEEGARRVGATHIVTGHNADDMAETVLMNFLRGDAGRLARGGGLGSPGEGGALPRC
RPLQFASQKEVVLYAHFRRLDYFSEECVYAPEAFRGHARDLLKRLEAARPSAVLDLVHSAERLALAPAAR
PPRPGACSRCGALASRALCQACALLDGLNRGRPRLAIGKGRRGLDEEATPGTPGDPARPPASKAVPTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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