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Report for CCDS30226.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30226.1 Public Mus musculus X Atp6ap1 23 108 98 CCDS HistoryNCBI Gene:54411Re-query CCDS DB by CCDS ID:30226.1Re-query CCDS DB by GeneID:54411See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30226.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019231.11 ENSMUSP00000019231.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019231.11Link to Ensembl Protein Viewer:ENSMUSP00000019231.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000019231Re-query CCDS DB by Protein ID:ENSMUSP00000019231
Original member NCBI NM_018794.4 NP_061264.1 Updated not alive Link to Nucleotide Sequence:NM_018794.4Link to Protein Sequence:NP_061264.1Re-query CCDS DB by Nucleotide ID:NM_018794Re-query CCDS DB by Protein ID:NP_061264
Current member NCBI NM_018794.5 NP_061264.1 Accepted alive Link to Nucleotide Sequence:NM_018794.5Link to Protein Sequence:NP_061264.1Re-query CCDS DB by Nucleotide ID:NM_018794Re-query CCDS DB by Protein ID:NP_061264Link to BLAST:NP_061264.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061264.1 463 Q9R1Q9 463 100% 0 0

Chromosomal Locations for CCDS 30226.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 74297179 74297321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74297623 74297749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74300250 74300324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74300578 74300771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74301324 74301364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74301936 74302021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74302362 74302600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74303222 74303269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74303358 74303586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 74303797 74304006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1392 nt):
ATGATGGCGGCAACAGTGGTATCTCGGATACGGACGGGGACAGGGCGGGCTCCAGTCATGTGGCTGTCTC
TGTCGTTGGTGGCAGTGGCAGCAGCAGTGGCCACGGAGCAGCAGGTGCCACTGGTACTGTGGTCGAGTGA
CCGGAATCTGTGGGCTCCTGTGGCCGACACACATGAGGGTCATATCACCAGCGATATGCAGCTTTCTACC
TACTTAGACCCTGCCCTGGAGCTGGGTCCCCGTAATGTACTGCTGTTCCTACAGGACAAGCTAAGCATTG
AGGATTTCACAGCATACGGTGGTGTGTTTGGAAATAAGCAGGACAGTGCCTTTTCTAACCTGGAGAATGC
CCTGGACTTGGCCCCCTCCTCACTGGTGCTTCCTGCTGTGGACTGGTATGCAATCAGCACTCTGACCACC
TACCTACAGGAGAAGCTTGGGGCTAGCCCCTTGCATGTGGATCTAGCTACCTTAAAGGAGCTGAAGCTCA
ATGCCAGCCTTCCTGCCCTGCTGCTCATCCGTCTGCCCTACACAGCCAGCTCCGGTCTGATGGCGCCCAG
GGAGGTCCTCACAGGTAACGATGAGGTCATCGGACAGGTACTGAGCACACTCAAGTCTGAAGATGTCCCT
TACACCGCAGCTCTTACTGCAGTCCGCCCTTCTAGAGTGGCCCGTGATATAACCATGGTGGCTGGGGGTC
TAGGTCGCCAGCTGCTTCAGACTCAGGTGGCATCTCCTGCGATCCATCCTCCTGTGAGTTACAATGACAC
TGCCCCAAGGATCCTGTTTTGGGCACAAAACTTCTCTGTGGCATACAAAGACGAGTGGAAAGACTTGACC
TCCCTCACCTTTGGTGTGGAGAATCTTAACTTGACCGGCTCCTTCTGGAATGACTCCTTTGCCATGCTTT
CACTGACCTATGAGCCACTCTTTGGTGCAACAGTGACATTCAAGTTCATTCTGGCTAGTCGCTTCTATCC
AGTGTCTGCCCGATATTGGTTTGCCATGGAACGACTTGAAATCCACAGCAATGGCTCTGTTGCCCATTTC
AATGTTTCCCAAGTCACAGGACCTAGCATCTATTCTTTCCACTGTGAGTACGTCAGCAGTGTGAGCAAGA
AAGGCAATCTCCTTGTGACCAACGTGCCCTCAGTCTGGCAGATGACTCTTCATAACTTCCAGATCCAGGC
CTTCAATGTGACTGGTGAACAGTTCTCCTATGCTAGCGACTGTGCTGGTTTCTTCTCTCCGGGCATCTGG
ATGGGTCTGCTCACCACCCTCTTCATGCTTTTCATATTCACCTATGGTCTGCACATGATACTCAGCCTAA
AGACCATGGATCGCTTTGATGACCACAAGGGCCCCACCATCACTTTGACCCAGATTGTGTGA

Translation (463 aa):
MMAATVVSRIRTGTGRAPVMWLSLSLVAVAAAVATEQQVPLVLWSSDRNLWAPVADTHEGHITSDMQLST
YLDPALELGPRNVLLFLQDKLSIEDFTAYGGVFGNKQDSAFSNLENALDLAPSSLVLPAVDWYAISTLTT
YLQEKLGASPLHVDLATLKELKLNASLPALLLIRLPYTASSGLMAPREVLTGNDEVIGQVLSTLKSEDVP
YTAALTAVRPSRVARDITMVAGGLGRQLLQTQVASPAIHPPVSYNDTAPRILFWAQNFSVAYKDEWKDLT
SLTFGVENLNLTGSFWNDSFAMLSLTYEPLFGATVTFKFILASRFYPVSARYWFAMERLEIHSNGSVAHF
NVSQVTGPSIYSFHCEYVSSVSKKGNLLVTNVPSVWQMTLHNFQIQAFNVTGEQFSYASDCAGFFSPGIW
MGLLTTLFMLFIFTYGLHMILSLKTMDRFDDHKGPTITLTQIV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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