NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17877.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17877.1 Public Mus musculus 3 Gbp5 23 108 98 CCDS HistoryNCBI Gene:229898Re-query CCDS DB by CCDS ID:17877.1Re-query CCDS DB by GeneID:229898See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17877.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090127.6 ENSMUSP00000087587.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090127.6Link to Ensembl Protein Viewer:ENSMUSP00000087587.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000090127Re-query CCDS DB by Protein ID:ENSMUSP00000087587
Original member Current member NCBI NM_153564.2 NP_705792.2 Accepted alive Link to Nucleotide Sequence:NM_153564.2Link to Protein Sequence:NP_705792.2Re-query CCDS DB by Nucleotide ID:NM_153564Re-query CCDS DB by Protein ID:NP_705792Link to BLAST:NP_705792.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705792.2 590 Q8CFB4-1 590 100% 0 0

Chromosomal Locations for CCDS 17877.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 142500557 142500746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142501262 142501389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142503016 142503125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142503723 142503922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142504252 142504494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142505382 142505662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142506705 142506917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142507690 142507792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142507915 142508096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 142521040 142521162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1773 nt):
ATGGCCCCAGAGATTCACATGCCAGAACCCTTGTGCCTCATTGGGAGCACCGAGGGACACCTAGTAACTA
ACCAGGAAGCCCTGAAGATTCTGTCTGCCATCACACAGCCAGTGGTGGTGGTAGCCATTGTGGGTCTTTA
TCGCACAGGCAAATCCTACCTGATGAACAAGCTGGCTGGGAAGGAGAAGGGCTTTTCTGTTGGATCCACT
GTACAGTCTCACACCAAGGGGATCTGGATGTGGTGTGTGCCTCACCCCCAAAAGCCAGACCACACTTTGG
TTCTGCTTGACACTGAAGGCCTGGGAGATGTGGAGAAGGATGATAAAAAGAATGATACTCAGATCTTTGC
ACTAGCAATCCTCCTCAGTAGCACCTTTGTATACAACACTATGAACAAAATTGACCAGGGGGCTATCGAC
CTATTGCACAATGTGACAGAACTGACAGACTTGCTCCGGACAAGAAACTCCTCTGATTCTAATCAAACTG
AGGGTGAGGGACCTGCTGACATGAGCTTCTTCCCAGACTTGGTGTGGACTCTGAGAGATTTCTTCCTGGA
CCTGCAAGCCAATGGGCATGCCATCACATCAGATGAATATCTGGAGAATTCACTGAAGCTGAAGCAAGGT
AGCGATGAAAGAACTCAAACATTCAATCTACCGCGGCTGTGCATACAGAAGTTCTTCCCAGTAAAGAAAT
GCTTTGTTTTTGACGCTCCTGCGCTTGGAAGTAAGCTTTCCCAGCTTCCAACACTCAGCAACGAGGAGCT
GAACTCAGATTTTGTGCAGGACCTTTCAGAATTCTGTTCACACATCTTCACCCAATCTAAGACCAAGACT
CTTCCAGGAGGCATCCAGGTCAACGGACCTCGTCTAGAAAGCCTGGTGCTGACTTATGTCGATGCCATCA
ACAGCGGGGCTCTGCCTTCCATAGAGAACACAGTAGTAACCTTGGCCCGGAGGGAGAACTCTGCAGCAGT
TCAAAAGGCCATTGGTCACTACGATCAGCTGATGAGCGAGAAGGTGCAGCTGCCCACAGAGACCCTCCAG
GAGCTGCTGGACCTGCACCGGACCTGTGAGCGAGAGGCCATAGAAATCTTCAGGAAGCATTCGTTCAAGG
ATGAGGGTGAATTTTTCCAGAAAGAATTGGAGAGCCTACTAAGTGCAAAGCAGGATGAGATTTGTAAGAA
GAACGCGGATGCTTCTGCAGCCCTCTGCTCAACCCTACTTGGGAGTATTTTTAAGCCTCTGGAACAAGAA
GTGGCGCAGGAGTTCTATCATAAACCAGGAGGCCACAAGCTCTTCCTTCAGAGGATGGAACAGCTGAAGG
CAAATTACCGTCAGCAGCCAGGGAAGGGAACACAGGCTGAGGAAGTGCTGCAGACCTATTTGAACGCCAA
AGAAACAGTGAGCCGTACAATTCTACAAACAGACCAGGTTCTCACAGACAAGGAGATCCAGAGTAAAGCG
GAACAAGAAAGAGCAGAGGCTGCCCGGCTCGAAGCACAGAGGTTGGAGGCTATTCGCATCCAGGAAGAGC
AAAGGAAAGCAGAGATGGAGAGACAGCATCAAGAGCAATTGAGGCAAATAGCATTGGAGAAGGCAAGAGT
TGCACAAGAGCAACAGTGGATCCTGAAGCAGAGAGCCCAGGAAGAGGCTGATAGAATCAAGGCAGAGCAG
GAAGCTCAACTCAGAGCACTTCAACAGCAGCTCCAACACATGAGGGAAATGAACCACCACCGTAGACATC
ATCATGACTGTGTTATAAGCTAA

Translation (590 aa):
MAPEIHMPEPLCLIGSTEGHLVTNQEALKILSAITQPVVVVAIVGLYRTGKSYLMNKLAGKEKGFSVGST
VQSHTKGIWMWCVPHPQKPDHTLVLLDTEGLGDVEKDDKKNDTQIFALAILLSSTFVYNTMNKIDQGAID
LLHNVTELTDLLRTRNSSDSNQTEGEGPADMSFFPDLVWTLRDFFLDLQANGHAITSDEYLENSLKLKQG
SDERTQTFNLPRLCIQKFFPVKKCFVFDAPALGSKLSQLPTLSNEELNSDFVQDLSEFCSHIFTQSKTKT
LPGGIQVNGPRLESLVLTYVDAINSGALPSIENTVVTLARRENSAAVQKAIGHYDQLMSEKVQLPTETLQ
ELLDLHRTCEREAIEIFRKHSFKDEGEFFQKELESLLSAKQDEICKKNADASAALCSTLLGSIFKPLEQE
VAQEFYHKPGGHKLFLQRMEQLKANYRQQPGKGTQAEEVLQTYLNAKETVSRTILQTDQVLTDKEIQSKA
EQERAEAARLEAQRLEAIRIQEEQRKAEMERQHQEQLRQIALEKARVAQEQQWILKQRAQEEADRIKAEQ
EAQLRALQQQLQHMREMNHHRRHHHDCVIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH