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Report for CCDS38263.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38263.1 Public Mus musculus 2 Zfp120 23 108 98 CCDS HistoryNCBI Gene:104348Re-query CCDS DB by CCDS ID:38263.1Re-query CCDS DB by GeneID:104348See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38263.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089207.12 ENSMUSP00000086615.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089207.12Link to Ensembl Protein Viewer:ENSMUSP00000086615.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000089207Re-query CCDS DB by Protein ID:ENSMUSP00000086615
Original member Current member NCBI NM_181266.2 NP_851783.2 Accepted alive Link to Nucleotide Sequence:NM_181266.2Link to Protein Sequence:NP_851783.2Re-query CCDS DB by Nucleotide ID:NM_181266Re-query CCDS DB by Protein ID:NP_851783Link to BLAST:NP_851783.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_851783.2 436 Q8BZW4-1 436 100% 0 0

Chromosomal Locations for CCDS 38263.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 150117156 150118200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150119565 150119628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150119825 150119951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150136568 150136642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGTTTCTGCTTGATGTGTTCTGTGTACCGCTCCTGGGTGCGGGGACCTCAGGCAAGCCCAGAAGTTCCG
ACATGGATATAGTGACCTATGATGATGTGCATGTGAACTTCACGTGGGAAGAGTGGGCTTTGCTGGATCC
TTCTCAGAAGGATCTCTACAGAGATGTGATGCTGGAGACCTACAGGAATCTCGCTGCTATAGGCTACTAT
TGGAAAGGCCATAATATTTCTGAAGGACATTTTCAAAATTCTAGAAGAAACGGAAGGCATGAAAGAAGTG
ATACTGAAGAGAAACTTTCTGAATTTACTCAATATGATAAAGACTTTGCATATCAGAGCCATCCTCAAAG
GCATGAAAGAATTTATTCTGGAGAGAAACCCTATGAAGGTGTCCAATATTTTGAAGACTTTGCACATCAC
AGTAGTCTCCAAATACAGAGAAGAACACATGTTGTAGAAAAACCCTATGAGTGTAACCAATGTGGCAAAG
CCTTTGCATACCACAGTTATCTTCAAAGGCATGAAAGAAGTCATACAGGAGAGAAACCTTATGAATGTAA
TCAATGCGGTAAAGCCTTTGGACGGCACAGTCATCTTCAGAGACATGAAAGAATTCATACAGGAGAAAAA
AGCTATGACTGTAATCAATGTGGTAAAACATTTGTACATCACAGTCATCTTCAAATACATAAAAGAACAC
ATATTGGAGAGAAACCCTTTGAATGTAACCAATGTGGTAAAGCCTTTGCACGAAACAGTCATCTCTTAAT
ACATAAAAGAATACATACTGGAGAGAAACCCTATGAATGTAAGCAATGTGGTAAAGCTTTTGCTTATCAA
AGTGGTCTCCTCTATCATAAAAGAAGATATACTGTAGAGAAACTCTATGAGTGTAACCAATGTGGTAAAG
CCTTTGCATGTCACAATAGTCTCCAAGTACATAAAAGAACACATACTGGAGAGAAACCCTATAAATGTAA
TCAGTGTGGAAAAGCCTTTGGACGCTACAGTTCTCTTCAAAGGCATGAAAGAATTCATACAGGAGAGAAA
CCTTATGAATGTAAGCAATGTGGTAAAGCCTTTGGACGTCACAGTTCTCTCCAAAGGCATGAAAGAATTC
ATACAGGACAAAAACCTGATGAATGTAGTCAATGTTGTAAAGACTGTGGATGTTACAATAGTCTCCAGAT
ACATAAAAGACCACATACTGGAGAGAAATACTTTGAGTGTAACCAATGTGGTAAAGGCTTTTCACAAAAC
TGTTATCTTGAAATACATAAAAGAGCACATACTGTAGAGAAACACTATTAG

Translation (436 aa):
MFLLDVFCVPLLGAGTSGKPRSSDMDIVTYDDVHVNFTWEEWALLDPSQKDLYRDVMLETYRNLAAIGYY
WKGHNISEGHFQNSRRNGRHERSDTEEKLSEFTQYDKDFAYQSHPQRHERIYSGEKPYEGVQYFEDFAHH
SSLQIQRRTHVVEKPYECNQCGKAFAYHSYLQRHERSHTGEKPYECNQCGKAFGRHSHLQRHERIHTGEK
SYDCNQCGKTFVHHSHLQIHKRTHIGEKPFECNQCGKAFARNSHLLIHKRIHTGEKPYECKQCGKAFAYQ
SGLLYHKRRYTVEKLYECNQCGKAFACHNSLQVHKRTHTGEKPYKCNQCGKAFGRYSSLQRHERIHTGEK
PYECKQCGKAFGRHSSLQRHERIHTGQKPDECSQCCKDCGCYNSLQIHKRPHTGEKYFECNQCGKGFSQN
CYLEIHKRAHTVEKHY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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