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Report for CCDS40945.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40945.1 Public Mus musculus X Rhox10 23 108 98 CCDS HistoryNCBI Gene:434769Re-query CCDS DB by CCDS ID:40945.1Re-query CCDS DB by GeneID:434769See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40945.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115150.3 ENSMUSP00000110803.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115150.3Link to Ensembl Protein Viewer:ENSMUSP00000110803.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000115150Re-query CCDS DB by Protein ID:ENSMUSP00000110803
Original member Current member NCBI NM_001024850.2 NP_001020021.1 Accepted alive Link to Nucleotide Sequence:NM_001024850.2Link to Protein Sequence:NP_001020021.1Re-query CCDS DB by Nucleotide ID:NM_001024850Re-query CCDS DB by Protein ID:NP_001020021Link to BLAST:NP_001020021.1

Chromosomal Locations for CCDS 40945.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 38066597 38066946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38069399 38069444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 38071447 38071641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (591 nt):
ATGGAGAGCAAATACTTCTACTTCGACCTCGATTATTATGGGGTAAGCTTCTATGAGGAAGTAATAATGA
CTGAATCTCAGCAGAGGGCTGCGGCCAGGGCAGCCCAATGTCGCTTTGGAAGAGGTGTAAGAGACCTGCA
CGAGCTGGGCCAGGACGACCACCCGACCTTTAAATACACGCAAACCTACAGCTCTGAAACAAGAAAGGAA
ACTCAAGCCCGTCCCAAAGAGCCCGAGAAAGCAGCGGGAGCAGTTTCTCGTCGCTCCAACAGCAAGAAGT
ACACCAATGCCCAAATGTGTGAACTAGAGAAGGCTTTCCAAGAGACCCAGTATCCTGATGCACACCAAAG
AAAAGCACTTGCAAAACTTATTGATGTGGACGAATGCAAGGTGAAGGCTTGGTTTAAATATAAGAGAGCT
AAATACAGGAGAAAACAAAAGGAGTTACTACTCAGCAATGCTACATCTGGAACCTCGAACAACTTTTCGG
CTCAGATGAATGAAGACCCCAAGAGTAGTACCTCTGTTCCTGAGGAGCAAATAGGGTTCATTGTGTGCCA
GCAACATCTTGGCAAATCCTGCTGGTCATGA

Translation (196 aa):
MESKYFYFDLDYYGVSFYEEVIMTESQQRAAARAAQCRFGRGVRDLHELGQDDHPTFKYTQTYSSETRKE
TQARPKEPEKAAGAVSRRSNSKKYTNAQMCELEKAFQETQYPDAHQRKALAKLIDVDECKVKAWFKYKRA
KYRRKQKELLLSNATSGTSNNFSAQMNEDPKSSTSVPEEQIGFIVCQQHLGKSCWS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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