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Report for CCDS87572.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87572.1 Public Homo sapiens 8 DLGAP2 24 110 108 CCDS HistoryNCBI Gene:9228Re-query CCDS DB by CCDS ID:87572.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 87572.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000637795.2 ENSP00000489774.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000637795.2Link to Ensembl Protein Viewer:ENSP00000489774.1Re-query CCDS DB by Nucleotide ID:ENST00000637795Re-query CCDS DB by Protein ID:ENSP00000489774
Original member Current member NCBI NM_001346810.2 NP_001333739.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001346810.2Link to Protein Sequence:NP_001333739.1Re-query CCDS DB by Nucleotide ID:NM_001346810Re-query CCDS DB by Protein ID:NP_001333739Link to BLAST:NP_001333739.1

Chromosomal Locations for CCDS 87572.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 737808 737825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 907912 907966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1258851 1258883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1501366 1501431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1548626 1549683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1565683 1565894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1626740 1626887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1632827 1633046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1668329 1668678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1669743 1669784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1676533 1676618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1678214 1678629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1691535 1691626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1697147 1697299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 1701188 1701406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3168 nt):
ATGTCCGCGCTGAGGAAGGTTTTGCCTGGCATTCTGCAGAAGCATTGCTGTATCTTACCAGACAGGAATA
CAGAGTCGCAGTGCACGCTCTGCGGGGAGCCGGAAGAGGAAGAAGCTGGAGACTTGGTCCAGCCGGGCAT
CAGCTTTCCGGGGCCGGCAGAGGAGGATCTAGACCCGCAGTACTCATGGTCGCCCACGCAGCACTTCAAT
GAGGAGCGCTACTCGCCCGCGCCCAGGAGCATGAAGGGCCTTTCCGGAAGTCGGACCCAGCCGCCGCTGT
GTTCCGGGCACACGTGTGGTCTGGCGCCCCCGGAGGACTGCGAGCACCTGCACCACGGGCCCGACGCGCG
GCCGCCCTACCTGCTGAGCCCCGCCGACAGCTGCCCCGGGGGGCGCCACCGCTGCTCGCCGCGCAGCTCG
GTGCACTCGGAGTGCGTGATGATGCCGGTGGTGCTGGGCGACCACGTGTCCAGCAGCACCTTCCCGCGGA
TGCACTACAGCTCGCACTACGACACGCGCGACGACTGCGCTGTGGCCCACGCGGGCGCCAAGATCAACCG
CATCCCGGCCAACCTGCTGGACCAGTTCGAGAAGCAGCTGCCGCTGCACCGGGACGGCTTCCACACGCTG
CAGTACCAGAGGACGTCCGCGGCCGCCGAGCAGCGCAGCGAGAGCCCCGGGCGGATCCGCCACCTGGTAC
ACTCCGTGCAGAAGCTCTTCACCAAGTCGCACTCGCTGGAGGGCTCCTCCAAAAGCAACGCCAACGGCAC
CAAGGCGGACGGCCGGGCGGACGACCACCACCACGCCCACCACGCCAAGCACAGCAAGAGGAGCAAGAGC
AAGGAGCGCAAGCCGGAGGGCAAGCCCCGGCCCGGCATGAGCAGCTGGTGGAGCTCGGACGACAACCTGG
ACAGCGACAGCACCTATCGGACGCCCAGCGTGCTCAACCGGCACCACCTGGGCCCCGTGGCCCACTGCTA
CCCCGACGCGCTGCAGAGCCCCTTCGGGGACCTGTCCCTCAAGACCTCCAAGAGCAACAACGACGTCAAG
TGCTCGGCCTGTGAGGGGTTGGCGCTGACGCCCGACGCCAAGTACCTGAAGCGCAGCTCCTGGTCTACGC
TGACGGTCAGCCAGGCCAAGGAGGCCTACCGCAAGAGCTCGCTGAACCTGGACAAGCCGCTGCTGCACCA
GGACGCCAAGCCCGCCCTGAGGCCGTGCCACTACCTCCAGGTACCTCAGGATGAGTGGGGAGGGTACCCC
ACCGGTGGCAAAGATGAGGAGATTCCCTGCAGGAGAATGAGAAGTGGGAGTTACATTAAAGCCATGGGGG
ACGAGGAGAGCGGAGAGTCAGACTCCAGCCCCAAGACATCACCAAAGTCGGCAATCCTACCAGAGCCGCT
GCTGAAGTCCATCGGACAGAGACCGCTTGGAGAGCACCAGACCCAGACCTACCTGCAAGCTGCAAGCGAT
GTGCCTGTGGGACACAGCCTGGACCCCGCTGCGAACTACAACTCCCCGAAATTCCGCTCCCGGAACCAGA
GCTACATGAGGGCCGTCAGCACCCTGAGCCAGGCCAGCTGCGTGAGCCAGGTGAGCGAGGCGGAGATCAA
TGGGCAATTCGAGTCCGTGTGCGAGTCCGTCTTCAGTGAAGTTGAATCTCAGGCCATGGATGCCCTCGAC
CTCCCGGGATGTTTCCGAACAAGGAGTCACAGCTACCTTCGAGCCATTCAAGCCGGCTACTCCCAAGATG
ACGAATGTATTCCCATGATGACACCCTCTGACATCACCTCCACCATCAGGTCAACAGCAGCTGTCTCATA
TACAAATTACAAGAAAACGCCCCCACCGGTGCCCCCTCGGACCACCTCCAAGCCTCTGATCTCGGTGACG
GCGCAGAGCAGCACCGAATCCACCCAGGACGCCTACCAGGACAGCCGCGCACAGAGGATGTCCCCGTGGC
CCCAGGACAGCCGCGGCCTCTACAACTCCACGGACAGCCTGGACAGCAACAAGGCCATGAACCTCGCGCT
GGAAACGGCCGCTGCCCAGCGCCACCTGCCAGAGAGCCAGAGCAGCTCTGTGCGGACCAGCGACAAGGCC
ATCCTGGTGTCCAAGGCGGAGGAGCTCCTCAAGAGCCGCTGCTCCTCCATCGGGATTCAGGATTCTGAAT
TCCCAGAGCATCAGCCATACCCAAGGTCAGATGTGGAAACGGCCACAGATTCTGACACGGAGAGCCGCGG
TCTGCGGGAATACCACTCTGTCGGGGTGCAAGTGGAAGATGAGAAGCGACACGGACGTTTTAAACGTTCT
AACAGCGTCACGGCCGCCGTCCAAGCTGACCTGGAGCTGGAGGGGTTCCCAGGCCACATCACCACGGAGG
ACAAAGGCCTTCAGTTCGGCTCATCCTTCCAGCGGCACTCCGAGCCCAGCACCCCCACCCAGTACAGCGC
GGTGAGAACTGTACGGACCCAGGGGCTCTTCAGCTATAGAGAAGACTATCGGACCCAAGTGGACACCTCC
ACCCTGCCCCCTCCAGACCCCTGGCTGGAGCCCGCCATCGACACGGTAGAGACTGGGAGGATGTCTCCGT
GCCGCAGGGATGGCTCGTGGTTTTTGAAGCTGCTGCACGCAGAGACAAAGAGGATGGAAGGCTGGTGCAA
AGAGATGGAGAGAGAGGCGGAGGAGAACGACCTCTCGGAGGAAATTCTCGGTAAAATCAGGAGTGCTGTT
GGGAGTGCCCAGCTTCTCATGTCCCAGAAATTCCAGCAGTTTTATTGGCTTTGCCAACAGAATATGGACC
CCAGCGCCATGCCGAGGCCGACGTCGCAGGACCTGGCCGGCTACTGGGACATGCTGCAGCTCTCCATTGA
GGACGTCAGCATGAAGTTCGACGAGCTGCAGCGGCTGCGGCTCAACGACTGGAAGATGATGGAGTCCCCG
GAAAGAAAGGAAGAAAGAAAGGTCCCGCCTCCAATACCAAAGAAGCCTCCCAAGGGGAAGTTTCCCATCA
CAAGAGAAAAATCCCTGGACCTGCCCGACAGACAACGCCAGGAAGCCCGGAGGCGCCTCATGGCCGCCAA
GCGAGCGGCGTCCTTCCGGCAGAATTCCGCCTCCGAGCGCGCGGACAGCATCGAGATCTACATCCCCGAG
GCCCAGACCCGGCTCTGA

Translation (1055 aa):
MSALRKVLPGILQKHCCILPDRNTESQCTLCGEPEEEEAGDLVQPGISFPGPAEEDLDPQYSWSPTQHFN
EERYSPAPRSMKGLSGSRTQPPLCSGHTCGLAPPEDCEHLHHGPDARPPYLLSPADSCPGGRHRCSPRSS
VHSECVMMPVVLGDHVSSSTFPRMHYSSHYDTRDDCAVAHAGAKINRIPANLLDQFEKQLPLHRDGFHTL
QYQRTSAAAEQRSESPGRIRHLVHSVQKLFTKSHSLEGSSKSNANGTKADGRADDHHHAHHAKHSKRSKS
KERKPEGKPRPGMSSWWSSDDNLDSDSTYRTPSVLNRHHLGPVAHCYPDALQSPFGDLSLKTSKSNNDVK
CSACEGLALTPDAKYLKRSSWSTLTVSQAKEAYRKSSLNLDKPLLHQDAKPALRPCHYLQVPQDEWGGYP
TGGKDEEIPCRRMRSGSYIKAMGDEESGESDSSPKTSPKSAILPEPLLKSIGQRPLGEHQTQTYLQAASD
VPVGHSLDPAANYNSPKFRSRNQSYMRAVSTLSQASCVSQVSEAEINGQFESVCESVFSEVESQAMDALD
LPGCFRTRSHSYLRAIQAGYSQDDECIPMMTPSDITSTIRSTAAVSYTNYKKTPPPVPPRTTSKPLISVT
AQSSTESTQDAYQDSRAQRMSPWPQDSRGLYNSTDSLDSNKAMNLALETAAAQRHLPESQSSSVRTSDKA
ILVSKAEELLKSRCSSIGIQDSEFPEHQPYPRSDVETATDSDTESRGLREYHSVGVQVEDEKRHGRFKRS
NSVTAAVQADLELEGFPGHITTEDKGLQFGSSFQRHSEPSTPTQYSAVRTVRTQGLFSYREDYRTQVDTS
TLPPPDPWLEPAIDTVETGRMSPCRRDGSWFLKLLHAETKRMEGWCKEMEREAEENDLSEEILGKIRSAV
GSAQLLMSQKFQQFYWLCQQNMDPSAMPRPTSQDLAGYWDMLQLSIEDVSMKFDELQRLRLNDWKMMESP
ERKEERKVPPPIPKKPPKGKFPITREKSLDLPDRQRQEARRRLMAAKRAASFRQNSASERADSIEIYIPE
AQTRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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