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Report for CCDS10172.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10172.1 Public Homo sapiens 15 GCNT3 24 110 108 CCDS HistoryNCBI Gene:9245Re-query CCDS DB by CCDS ID:10172.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10172.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396065.3 ENSP00000379377.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396065.3Link to Ensembl Protein Viewer:ENSP00000379377.1Re-query CCDS DB by Nucleotide ID:ENST00000396065Re-query CCDS DB by Protein ID:ENSP00000379377
Original member Current member EBI ENST00000560585.5 ENSP00000452741.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000560585.5Link to Ensembl Protein Viewer:ENSP00000452741.1Re-query CCDS DB by Nucleotide ID:ENST00000560585Re-query CCDS DB by Protein ID:ENSP00000452741
Original member Current member NCBI NM_004751.3 NP_004742.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004751.3Link to Protein Sequence:NP_004742.1Re-query CCDS DB by Nucleotide ID:NM_004751Re-query CCDS DB by Protein ID:NP_004742Link to BLAST:NP_004742.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004742.1 438 O95395 438 100% 0 0

Chromosomal Locations for CCDS 10172.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 59618239 59619555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1317 nt):
ATGGTTCAATGGAAGAGACTCTGCCAGCTGCATTACTTGTGGGCTCTGGGCTGCTATATGCTGCTGGCCA
CTGTGGCTCTGAAACTTTCTTTCAGGTTGAAGTGTGACTCTGACCACTTGGGTCTGGAGTCCAGGGAATC
TCAAAGCCAGTACTGTAGGAATATCTTGTATAATTTCCTGAAACTTCCAGCAAAGAGGTCTATCAACTGT
TCAGGGGTCACCCGAGGGGACCAAGAGGCAGTGCTTCAGGCTATTCTGAATAACCTGGAGGTCAAGAAGA
AGCGAGAGCCTTTCACAGACACCCACTACCTCTCCCTCACCAGAGACTGTGAGCACTTCAAGGCTGAAAG
GAAGTTCATACAGTTCCCACTGAGCAAAGAAGAGGTGGAGTTCCCTATTGCATACTCTATGGTGATTCAT
GAGAAGATTGAAAACTTTGAAAGGCTACTGCGAGCTGTGTATGCCCCTCAGAACATATACTGTGTCCATG
TGGATGAGAAGTCCCCAGAAACTTTCAAAGAGGCGGTCAAAGCAATTATTTCTTGCTTCCCAAATGTCTT
CATAGCCAGTAAGCTGGTTCGGGTGGTTTATGCCTCCTGGTCCAGGGTGCAAGCTGACCTCAACTGCATG
GAAGACTTGCTCCAGAGCTCAGTGCCGTGGAAATACTTCCTGAATACATGTGGGACGGACTTTCCTATAA
AGAGCAATGCAGAGATGGTCCAGGCTCTCAAGATGTTGAATGGGAGGAATAGCATGGAGTCAGAGGTACC
TCCTAAGCACAAAGAAACCCGCTGGAAATATCACTTTGAGGTAGTGAGAGACACATTACACCTAACCAAC
AAGAAGAAGGATCCTCCCCCTTATAATTTAACTATGTTTACAGGGAATGCGTACATTGTGGCTTCCCGAG
ATTTCGTCCAACATGTTTTGAAGAACCCTAAATCCCAACAACTGATTGAATGGGTAAAAGACACTTATAG
CCCAGATGAACACCTCTGGGCCACCCTTCAGCGTGCACGGTGGATGCCTGGCTCTGTTCCCAACCACCCC
AAGTACGACATCTCAGACATGACTTCTATTGCCAGGCTGGTCAAGTGGCAGGGTCATGAGGGAGACATCG
ATAAGGGTGCTCCTTATGCTCCCTGCTCTGGAATCCACCAGCGGGCTATCTGCGTTTATGGGGCTGGGGA
CTTGAATTGGATGCTTCAAAACCATCACCTGTTGGCCAACAAGTTTGACCCAAAGGTAGATGATAATGCT
CTTCAGTGCTTAGAAGAATACCTACGTTATAAGGCCATCTATGGGACTGAACTTTGA

Translation (438 aa):
MVQWKRLCQLHYLWALGCYMLLATVALKLSFRLKCDSDHLGLESRESQSQYCRNILYNFLKLPAKRSINC
SGVTRGDQEAVLQAILNNLEVKKKREPFTDTHYLSLTRDCEHFKAERKFIQFPLSKEEVEFPIAYSMVIH
EKIENFERLLRAVYAPQNIYCVHVDEKSPETFKEAVKAIISCFPNVFIASKLVRVVYASWSRVQADLNCM
EDLLQSSVPWKYFLNTCGTDFPIKSNAEMVQALKMLNGRNSMESEVPPKHKETRWKYHFEVVRDTLHLTN
KKKDPPPYNLTMFTGNAYIVASRDFVQHVLKNPKSQQLIEWVKDTYSPDEHLWATLQRARWMPGSVPNHP
KYDISDMTSIARLVKWQGHEGDIDKGAPYAPCSGIHQRAICVYGAGDLNWMLQNHHLLANKFDPKVDDNA
LQCLEEYLRYKAIYGTEL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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