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Report for CCDS84608.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84608.1 Public Mus musculus 3 Il7 23 108 98 CCDS HistoryNCBI Gene:16196Re-query CCDS DB by CCDS ID:84608.1Re-query CCDS DB by GeneID:16196See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84608.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168269.7 ENSMUSP00000126219.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168269.7Link to Ensembl Protein Viewer:ENSMUSP00000126219.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000168269Re-query CCDS DB by Protein ID:ENSMUSP00000126219
Original member Current member EBI ENSMUST00000192202.5 ENSMUSP00000141508.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000192202.5Link to Ensembl Protein Viewer:ENSMUSP00000141508.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000192202Re-query CCDS DB by Protein ID:ENSMUSP00000141508
Original member Current member EBI ENSMUST00000194184.5 ENSMUSP00000141827.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000194184.5Link to Ensembl Protein Viewer:ENSMUSP00000141827.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000194184Re-query CCDS DB by Protein ID:ENSMUSP00000141827
Original member Current member NCBI NM_001313888.1 NP_001300817.1 Accepted alive Link to Nucleotide Sequence:NM_001313888.1Link to Protein Sequence:NP_001300817.1Re-query CCDS DB by Nucleotide ID:NM_001313888Re-query CCDS DB by Protein ID:NP_001300817Link to BLAST:NP_001300817.1
Original member Current member NCBI NM_001313890.1 NP_001300819.1 Accepted alive Link to Nucleotide Sequence:NM_001313890.1Link to Protein Sequence:NP_001300819.1Re-query CCDS DB by Nucleotide ID:NM_001313890Re-query CCDS DB by Protein ID:NP_001300819Link to BLAST:NP_001300819.1

Chromosomal Locations for CCDS 84608.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 7573840 7573947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 7575998 7576129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 7577174 7577254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 7604031 7604051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (342 nt):
ATGATCAGCATCGATGAATTGGACAAAATGACAGGAACTGATAGTAATTGCCCGAATAATGAACCAAACT
TTTTTAGAAAACATGTATGTGATGATACAAAGGAAGCTGCTTTTCTAAATCGTGCTGCTCGCAAGTTGAA
GCAATTTCTTAAAATGAATATCAGTGAAGAATTCAATGTCCACTTACTAACAGTATCACAAGGCACACAA
ACACTGGTGAACTGCACAAGTAAGGAAGAAAAAAACGTAAAGGAACAGAAAAAGAATGATGCATGTTTCC
TAAAGAGACTACTGAGAGAAATAAAAACTTGTTGGAATAAAATTTTGAAGGGCAGTATATAA

Translation (113 aa):
MISIDELDKMTGTDSNCPNNEPNFFRKHVCDDTKEAAFLNRAARKLKQFLKMNISEEFNVHLLTVSQGTQ
TLVNCTSKEEKNVKEQKKNDACFLKRLLREIKTCWNKILKGSI


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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