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Report for CCDS29116.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29116.1 Public Mus musculus 18 Proc 23 108 98 CCDS HistoryNCBI Gene:19123Re-query CCDS DB by CCDS ID:29116.1Re-query CCDS DB by GeneID:19123See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29116.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171765.1 ENSMUSP00000132226.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171765.1Link to Ensembl Protein Viewer:ENSMUSP00000132226.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171765Re-query CCDS DB by Protein ID:ENSMUSP00000132226
Original member Current member EBI ENSMUST00000234651.1 ENSMUSP00000157269.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234651.1Link to Ensembl Protein Viewer:ENSMUSP00000157269.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234651Re-query CCDS DB by Protein ID:ENSMUSP00000157269
Original member Current member NCBI NM_001042767.3 NP_001036232.1 Accepted alive Link to Nucleotide Sequence:NM_001042767.3Link to Protein Sequence:NP_001036232.1Re-query CCDS DB by Nucleotide ID:NM_001042767Re-query CCDS DB by Protein ID:NP_001036232Link to BLAST:NP_001036232.1
Original member Current member NCBI NM_001313938.1 NP_001300867.1 Accepted alive Link to Nucleotide Sequence:NM_001313938.1Link to Protein Sequence:NP_001300867.1Re-query CCDS DB by Nucleotide ID:NM_001313938Re-query CCDS DB by Protein ID:NP_001300867Link to BLAST:NP_001300867.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036232.1 460 P33587 460 100% 0 0
NP_001300867.1 460 P33587 460 100% 0 0

Chromosomal Locations for CCDS 29116.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 32123230 32123816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32125095 32125212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32127393 32127538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32133147 32133281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32133376 32133513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32133633 32133657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32134850 32135013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 32135861 32135930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1383 nt):
ATGTGGCAATTCAGAGTCTTCCTGCTGCTCATGTCCACCTGGGGAATATCTAGCATACCGGCCCATCCTG
ACCCAGTGTTCTCCAGCAGCGAGCATGCCCACCAGGTGCTTCGGGTCAGACGTGCCAACAGCTTCCTGGA
AGAGATGCGGCCAGGCAGCCTGGAACGGGAGTGTATGGAGGAGATCTGTGACTTCGAGGAGGCCCAGGAG
ATTTTCCAAAATGTGGAAGACACACTGGCCTTCTGGATCAAGTACTTTGACGGTGACCAGTGCTCGGCTC
CACCCTTGGACCACCAGTGCGACAGCCCATGCTGCGGGCATGGCACTTGCATCGACGGCATAGGCAGCTT
CAGCTGCAGCTGCGATAAGGGCTGGGAGGGCAAGTTCTGTCAGCAGGAGTTGCGCTTCCAGGACTGTCGG
GTGAACAATGGCGGCTGCTTGCACTACTGCCTGGAGGAGAGCAATGGGCGGCGCTGCGCTTGTGCCCCGG
GCTATGAGCTGGCAGACGACCACATGCGCTGCAAGTCCACTGTGAATTTTCCATGTGGGAAACTGGGGAG
GTGGATAGAGAAGAAACGCAAGATCCTCAAACGAGACACAGACTTAGAAGATGAACTGGAACCAGATCCA
AGGATAGTCAACGGAACGCTGACGAAGCAGGGTGACAGTCCTTGGCAGGCAATCCTTCTGGACTCCAAGA
AGAAGCTGGCCTGCGGAGGGGTGCTCATCCACACTTCCTGGGTGCTGACGGCAGCCCACTGCGTGGAGGG
CACCAAGAAGCTTACCGTGAGGCTTGGTGAGTATGATCTGCGACGCAGGGACCACTGGGAGCTGGACCTG
GACATCAAGGAGATCCTCGTCCACCCTAACTACACCCGGAGCAGCAGTGACAACGACATTGCTCTGCTCC
GCCTAGCCCAGCCAGCCACTCTCTCCAAAACCATAGTGCCCATCTGCCTGCCGAACAATGGGCTGGCGCA
GGAGCTCACTCAGGCTGGCCAGGAGACAGTGGTGACAGGCTGGGGCTATCAAAGCGACAGAATCAAGGAT
GGCAGAAGGAACCGCACCTTCATCCTCACCTTCATCCGCATCCCTTTGGTTGCTCGAAATGAGTGCGTGG
AGGTCATGAAGAATGTGGTCTCGGAGAACATGCTGTGTGCAGGCATCATTGGGGACACGAGAGACGCCTG
TGATGGTGACAGTGGGGGGCCCATGGTGGTCTTCTTTCGGGGTACCTGGTTCCTGGTGGGCCTGGTGAGC
TGGGGTGAGGGCTGTGGGCACACCAACAACTATGGCATCTACACCAAAGTGGGAAGCTACCTCAAATGGA
TTCACAGTTACATTGGGGAAAAGGGTGTCTCCCTTAAGAGCCAGAAGCTATAG

Translation (460 aa):
MWQFRVFLLLMSTWGISSIPAHPDPVFSSSEHAHQVLRVRRANSFLEEMRPGSLERECMEEICDFEEAQE
IFQNVEDTLAFWIKYFDGDQCSAPPLDHQCDSPCCGHGTCIDGIGSFSCSCDKGWEGKFCQQELRFQDCR
VNNGGCLHYCLEESNGRRCACAPGYELADDHMRCKSTVNFPCGKLGRWIEKKRKILKRDTDLEDELEPDP
RIVNGTLTKQGDSPWQAILLDSKKKLACGGVLIHTSWVLTAAHCVEGTKKLTVRLGEYDLRRRDHWELDL
DIKEILVHPNYTRSSSDNDIALLRLAQPATLSKTIVPICLPNNGLAQELTQAGQETVVTGWGYQSDRIKD
GRRNRTFILTFIRIPLVARNECVEVMKNVVSENMLCAGIIGDTRDACDGDSGGPMVVFFRGTWFLVGLVS
WGEGCGHTNNYGIYTKVGSYLKWIHSYIGEKGVSLKSQKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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