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Report for CCDS26226.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26226.1 Public Mus musculus 13 Akr1e1 23 108 98 CCDS HistoryNCBI Gene:56043Re-query CCDS DB by CCDS ID:26226.1Re-query CCDS DB by GeneID:56043See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26226.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091848.6 ENSMUSP00000089459.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091848.6Link to Ensembl Protein Viewer:ENSMUSP00000089459.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000091848Re-query CCDS DB by Protein ID:ENSMUSP00000089459
Original member Current member NCBI NM_018859.2 NP_061347.2 Accepted alive Link to Nucleotide Sequence:NM_018859.2Link to Protein Sequence:NP_061347.2Re-query CCDS DB by Nucleotide ID:NM_018859Re-query CCDS DB by Protein ID:NP_061347Link to BLAST:NP_061347.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061347.2 301 Q9DCT1 301 100% 0 0

Chromosomal Locations for CCDS 26226.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 4593256 4593298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4593562 4593644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4595071 4595154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4595660 4595732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4597485 4597582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4598770 4598892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4601218 4601295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4602681 4602797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4607391 4607558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 4609085 4609123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (906 nt):
ATGGAAAACATCCCTACAGTGGGCTTGGGCACCTGGAAGGCCTCCCCAGGAGAAGTGACTGATGCAGTTA
AGTTGGCTATCAACCTGGGCTACCGGCACTTCGATTGTGCTTACTTATACCACAATGAGAGCGAGGTGGG
AATGGGAATCAGTGAGAAGATCAAGGAGGGCGTGGTGAAGAGAGAGGATCTCTTTGTAGTCAGTAAGCTG
TGGTGTACCTGCCACAAGAAGTCATTGGTGAAAACAGCATGCACCAATACCCTGGAAGCCCTAAACTTGG
ATTACCTGGACCTCTACCTCATACACTGGCCCATGGGTTTCAAGCCTGGGGAAAAAGATATCCCTTTGGA
TCGCAATGGCAAGGTCATACCCAGTCACACCAGCTTTCTTGACACTTGGGAGGCCATGGAGGACCTGGTG
TTTGAGGGTCTGGTGAAGAACCTTGGGGTGTCCAACTTTAACCATGAACAGCTTGAGAGGCTTTTGGATA
AGCCTGGTTTGAGGGTCAGGCCGATAACTAACCAGATTGAATGTCACCCATATCTTAATCAAAAGAAGCT
GATTGATTTTTGCCATAAAAGAAATGTGTCTGTGACTGCTTACCGTCCCCTCGGTGGCTCAGGAGGTGGG
TTTCACTTGATGGATGATACTGTCATTCGAAAGATTGCAAAGAAGCATGGGAAGTCTCCTGCTCAGATTT
TGATCCGATTTCAGATCCAAAGGAACTTAATAGTGATCCCCAAATCTGTCACCCCAAGTCGGATTAGAGA
GAATATCCAGGTATTTGATTTTGAATTAACTGAAAAAGATATGGAGGAACTCCTCAGCCTAGACAAGAAC
CTCCGTTTGGCCACATTCCCCACAACTGAAAATCACCAAGACTATCCTTTCCACATAGAGTATTGA

Translation (301 aa):
MENIPTVGLGTWKASPGEVTDAVKLAINLGYRHFDCAYLYHNESEVGMGISEKIKEGVVKREDLFVVSKL
WCTCHKKSLVKTACTNTLEALNLDYLDLYLIHWPMGFKPGEKDIPLDRNGKVIPSHTSFLDTWEAMEDLV
FEGLVKNLGVSNFNHEQLERLLDKPGLRVRPITNQIECHPYLNQKKLIDFCHKRNVSVTAYRPLGGSGGG
FHLMDDTVIRKIAKKHGKSPAQILIRFQIQRNLIVIPKSVTPSRIRENIQVFDFELTEKDMEELLSLDKN
LRLATFPTTENHQDYPFHIEY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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