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Report for CCDS38009.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38009.1 Public Mus musculus 19 Trim8 23 108 98 CCDS HistoryNCBI Gene:93679Re-query CCDS DB by CCDS ID:38009.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38009.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026008.8 ENSMUSP00000026008.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026008.8Link to Ensembl Protein Viewer:ENSMUSP00000026008.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026008Re-query CCDS DB by Protein ID:ENSMUSP00000026008
Original member Current member NCBI NM_053100.2 NP_444330.2 Accepted alive Link to Nucleotide Sequence:NM_053100.2Link to Protein Sequence:NP_444330.2Re-query CCDS DB by Nucleotide ID:NM_053100Re-query CCDS DB by Protein ID:NP_444330Link to BLAST:NP_444330.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444330.2 551 Q99PJ2 551 100% 0 0

Chromosomal Locations for CCDS 38009.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 46502444 46503013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46512723 46512818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46513108 46513341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46514453 46514484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46514622 46514737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46515059 46515666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1656 nt):
ATGGCGGAGAATTGGAAGAACTGCTTTGAGGAGGAGCTCATCTGCCCCATCTGCCTGCACGTTTTCGTGG
AACCGGTGCAGCTGCCATGCAAACATAACTTCTGCCGGGGCTGCATCGGCGAGGCTTGGGCCAAGGACAG
TGGCCTTGTGCGCTGCCCGGAGTGCAACCAGGCCTACAATCAGAAGCCGGGCCTGGAGAAGAACCTGAAG
CTCACCAACATCGTGGAGAAGTTCAACGCCCTGCACGTGGAGAAGCCGCCGACGGCACTGCACTGCGTGT
TCTGTCGCCGCGGCCCCCCGCTGCCGGCACAGAAGGTCTGCCTGCGCTGCGAGGCTCCCTGCTGCCAGTC
TCACGTGCAGACGCACCTGCAGCAGCCCTCCACCGCCCGCGGGCACCTCCTGGTGGAGGCGGACGACGTG
CGGGCCTGGAGCTGCCCGCAGCACAACGCCTACCGCCTGTACCACTGCGAGGCCGAGCAGGTGGCTGTGT
GCCAGTACTGCTGCTACTACAGCGGCGCGCATCAGGGACACTCGGTGTGTGACGTGGAGATACGGAGGAA
TGAGATACGGAAGATGCTCATGAAGCAGCAGGAGCGGCTGGAGGAGAGAGAGCAGGACATTGAGGACCAG
CTGTACAAGCTCGAGTCAGACAAGCGCCTGGTGGAGGAGAAAGTGAGCCAGCTGAAGGAGGAGGTGCGGC
TGCAGTACGAAAAGCTGCACCAGCTGCTGGATGAAGACTTGCGGCAGACAGTGGAGGTCCTGGACAAGGC
GCAAGCCAAGTTCTGCAGCGAGAACGCGGCGCAGGCGCTGCACCTTGGGGAGCGCATGCAGGAGGCCAAG
AAGCTGCTGGGCTCCCTGCAGCGTCTCTTCGACAAGACAGAGGACGTCGGCTTCATGAAGAACACCAAGT
CTGTGAAAATCCTAATGGACAGGACCCAGACCTGCACGGGCAGCAGCCTTTCTCCCCCTAAGATCGGCCA
CCTGAACTCCAAGCTGTTCCTGAACGAGGTGGCCAAGAAGGAGAAGCAGTTGCGGAAGATGCTAGAAGGT
CCCTTCAGCACACCGGTGCCCTTCCTACAGAGCGTACCCCTGTACCCTTGTGGTGTGAACAGCTCTGGGG
CCGAAAAGCGCAAGCACTCGACAGCCTTCCCTGAGGCTAGCTTCCTGGAGACTTCGTCAGGCCCAGTGGG
CGGCCAGTACGGGGCAGCGGGCACAGCCAGCAGCGAGGGGCAGTCTGGGCAGCCCCTGGGTCCCTGCAGC
TCCACGCAGCACTTGGTGGCTCTGCCAGGCGGTACCCAGCCAGTACACTCGAGTCCCGTGTTCCCCCCTT
CGCAGTACCCCAACGGCTCCACCACCCAGCAACCCATGCTCCCCCAGTATGGCGGCCGCAAGATTCTCGT
CTGTTCTGTGGACAACTGTTACTGCTCTTCCGTGGCCAACCACGGTGGCCACCAGCCGTACCCCCGATCC
GGCCACTTCCCCTGGACAGTGCCCTCACAGGAGTATTCACACCCACTTCCACCCACACCCTCCGTCCCTC
AGTCACTTCCTGGCCTGGCGGTCAGAGACTGGCTCGACGCTTCTCAGCAGCCTGGCCACCAGGATTTCTA
CAGGGTGTATGGGCAGCCGTCCACCAAACACTATGTGACAAGCTAA

Translation (551 aa):
MAENWKNCFEEELICPICLHVFVEPVQLPCKHNFCRGCIGEAWAKDSGLVRCPECNQAYNQKPGLEKNLK
LTNIVEKFNALHVEKPPTALHCVFCRRGPPLPAQKVCLRCEAPCCQSHVQTHLQQPSTARGHLLVEADDV
RAWSCPQHNAYRLYHCEAEQVAVCQYCCYYSGAHQGHSVCDVEIRRNEIRKMLMKQQERLEEREQDIEDQ
LYKLESDKRLVEEKVSQLKEEVRLQYEKLHQLLDEDLRQTVEVLDKAQAKFCSENAAQALHLGERMQEAK
KLLGSLQRLFDKTEDVGFMKNTKSVKILMDRTQTCTGSSLSPPKIGHLNSKLFLNEVAKKEKQLRKMLEG
PFSTPVPFLQSVPLYPCGVNSSGAEKRKHSTAFPEASFLETSSGPVGGQYGAAGTASSEGQSGQPLGPCS
STQHLVALPGGTQPVHSSPVFPPSQYPNGSTTQQPMLPQYGGRKILVCSVDNCYCSSVANHGGHQPYPRS
GHFPWTVPSQEYSHPLPPTPSVPQSLPGLAVRDWLDASQQPGHQDFYRVYGQPSTKHYVTS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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