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Report for CCDS27308.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27308.1 Public Mus musculus 14 Klhl1 23 108 98 CCDS HistoryNCBI Gene:93688Re-query CCDS DB by CCDS ID:27308.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27308.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022666.8 ENSMUSP00000022666.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022666.8Link to Ensembl Protein Viewer:ENSMUSP00000022666.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022666Re-query CCDS DB by Protein ID:ENSMUSP00000022666
Original member NCBI NM_053105.2 NP_444335.2 Updated not alive Link to Nucleotide Sequence:NM_053105.2Link to Protein Sequence:NP_444335.2Re-query CCDS DB by Nucleotide ID:NM_053105Re-query CCDS DB by Protein ID:NP_444335
Current member NCBI NM_053105.3 NP_444335.2 Accepted alive Link to Nucleotide Sequence:NM_053105.3Link to Protein Sequence:NP_444335.2Re-query CCDS DB by Nucleotide ID:NM_053105Re-query CCDS DB by Protein ID:NP_444335Link to BLAST:NP_444335.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444335.2 751 Q9JI74 751 100% 0 0

Chromosomal Locations for CCDS 27308.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 96106340 96106399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 96123217 96123388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 96136585 96136797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 96151906 96152068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 96201213 96201437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 96240208 96240394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 96280003 96280215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 96346770 96346966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 96368538 96368674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 96381771 96381953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 96517812 96518317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2256 nt):
ATGTCCGGCTCCGGGAGAAAAGACTTCGATGTGAAGCACATCCTGCGACTCCGCTGGAAACTCTTCAGCC
ATCCCTCGCCGGCCTCCAGTAGCCCAGCGGGGGGCAGCTGCCTGCAACAGGACAGCGGAGGAGGCAGCTT
TGAGCACTGGGGTCCTAGCCAGAGTCGGCTGCTCAAAAACCAGGAAAAGGGCAGTGTGAGCGCTTTCTGG
AAAAAGCCTTCTTCCTCCTCTTCCTCCTCCTCTTCCTCCTCGTCTTCTGCTTCATCTTCTCCTTTCAATC
CGCTGAATGGCACCTTACTACCAGTTGCCACGAGGCTGCAGCAAGGGGCTCCCGGGCAGGGCACCCAGCA
GCCCGCCAGGACTCTTTTCTACGTGGAGTCCCTAGAGGAGGAGGTAGTGACAGGCATGGACTTTTCTGGA
CCAGAGGACAAAGGATTGGCCCTGAAAGAGCTCCAAGCGGAGCCTGCCAGCTCTATCCAGGCAACAGGTG
AAGGATGTGGACACAGGTTGACATCGACCAATCATTCACTGACACCTCAAAGTGATTTGGATTCCAGCAG
CTCCGAAGAATTCTATCAAGCTGTTCACCATGCTGAGCAATCATTTAGAAAGATGGAGAATTATTTAAAG
CAACAGCAGCTCTGTGATGTCATCCTGATAGTTGGAAATCGAAAGATACCTGCTCATAGGCTTGTTCTGA
GTTCTGTCTCTGACTATTTTGCTGCCATGTTTACAAGTGATGTCTGTGAAGCCAAGCAAGAGGAGATCAA
GATGGAAGGCATAGACCCAAATGCACTCTGGGATCTTGTTCAATTTGCATATACAGGTTGCTTGGAATTA
AAAGAAGACACTATTGAAAACCTTCTTGCAGCTGCTTGCCTTCTCCAGCTCCCTCAAGTGGTCGAAGTGT
GTTGTCACTTCCTCATGAAACTTCTGCATCCATCCAACTGTTTAGGAATAAGGGCATTTGCTGATGCTCA
AGGATGCATTGAATTAATGAAGGTGGCACACAGCTACACCATGGAAAACATAATGGAAGTAATCAGAAAT
CAAGAGTTTTTACTCCTTCCAGCTGAAGAGCTCCATAAACTACTGGCCAGTGATGATGTAAATGTTCCTG
ATGAAGAGACCATTTTCCATGCACTGATGATGTGGGTCAAGTATGACATGCAGCGGAGATGTAGTGACCT
GAGTATGCTCCTTGCCTTCATAAGATTACCACTGCTTCCACCACAGATACTGGCTGACCTTGAAAACCAT
GCACTATTCAAGAATGATTTGGAATGTCAAAAACTGATTCTGGAAGCAATGAAATATCATCTATTGCCCG
AAAGAAGAACTTTAATGCAAAGTCCAAGAACTAAGCCCAGAAAATCTACAGTTGGAACTCTTTATGCAGT
GGGGGGAATGGATAATAACAAAGGGGCTACAACCATAGAGAAGTATGACCTCCGAACAAATCTGTGGATT
CAGGCTGGAATGATGAATGGCAGAAGGCTTCAGTTCGGTGTGGCTGTCATTGATGACAAGCTCTTTGTAA
TTGGAGGTCGAGATGGCTTAAAGACTTTGAACACTGTTGAATGTTACAATCCCAAAACCAAGACATGGAC
TGTTTTGCCACCAATGTCAACACATAGGCATGGTCTAGGAGTAACTGTACTGGAAGGGCCTATCTATGCA
GTGGGAGGCCATGACGGCTGGAGCTATCTGAACACAGTGGAAAGGTGGGATCCCCAGAGCCAGCAGTGGA
CATATGTAGCCAGTATGTCCATTGCTCGGAGCACGGTTGGAGTAGCAGCACTGAATGGAAAGTTGTACTC
CGTTGGGGGTCGAGATGGAAGTTCCTGTCTGAGTTCAATGGAATACTATGATCCTCATACAAATAAGTGG
AGCATGTGCGCACCGATGTGTAAGAGGAGAGGGGGTGTTGGAGTGGCCACCTGTGATGGTTTCCTGTATG
CAGTGGGTGGCCATGATGCTCCTGCTTCAAACCACTGTTCCAGGCTCCTGGACTACGTGGAAAGGTATGA
TCCAAAAACAGATACATGGACCATGGTGGCTCCTTTGAGTATGCCTAGAGATGCTGTTGGTGTCTGTCTC
CTTGGTGACAGGCTATATGCTGTTGGGGGCTATGATGGGCAGACTTACCTCAACACCATGGAGTCCTATG
ATCCACAAACTAATGAGTGGACACAGATGGCTTCATTGAATATTGGGAGAGCAGGTGCCTGTGTGGTTGT
CATCAAGCAACCTTGA

Translation (751 aa):
MSGSGRKDFDVKHILRLRWKLFSHPSPASSSPAGGSCLQQDSGGGSFEHWGPSQSRLLKNQEKGSVSAFW
KKPSSSSSSSSSSSSSASSSPFNPLNGTLLPVATRLQQGAPGQGTQQPARTLFYVESLEEEVVTGMDFSG
PEDKGLALKELQAEPASSIQATGEGCGHRLTSTNHSLTPQSDLDSSSSEEFYQAVHHAEQSFRKMENYLK
QQQLCDVILIVGNRKIPAHRLVLSSVSDYFAAMFTSDVCEAKQEEIKMEGIDPNALWDLVQFAYTGCLEL
KEDTIENLLAAACLLQLPQVVEVCCHFLMKLLHPSNCLGIRAFADAQGCIELMKVAHSYTMENIMEVIRN
QEFLLLPAEELHKLLASDDVNVPDEETIFHALMMWVKYDMQRRCSDLSMLLAFIRLPLLPPQILADLENH
ALFKNDLECQKLILEAMKYHLLPERRTLMQSPRTKPRKSTVGTLYAVGGMDNNKGATTIEKYDLRTNLWI
QAGMMNGRRLQFGVAVIDDKLFVIGGRDGLKTLNTVECYNPKTKTWTVLPPMSTHRHGLGVTVLEGPIYA
VGGHDGWSYLNTVERWDPQSQQWTYVASMSIARSTVGVAALNGKLYSVGGRDGSSCLSSMEYYDPHTNKW
SMCAPMCKRRGGVGVATCDGFLYAVGGHDAPASNHCSRLLDYVERYDPKTDTWTMVAPLSMPRDAVGVCL
LGDRLYAVGGYDGQTYLNTMESYDPQTNEWTQMASLNIGRAGACVVVIKQP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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